chr12 : 54,164,378 – 54,164,761
383 bp 121 TFs 1 linked gene
This 383 bp open chromatin element is linked to ENSG00000257534 and is bound by 121 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000257534 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:54,159,378 – 54,169,761
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
121 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 330 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 349 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 249 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 230 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 217 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 383 bp overlap
BRD2 1 dataset
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 79 bp overlap
BRD4 11 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 288 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 383 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 224 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 383 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 202 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 330 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 297 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 261 bp overlap
ChIP hESC GSE33281.BRD4.hESC 73 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 303 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 300 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 247 bp overlap
CEBPD 1 dataset
Motif DE_24h DE_24h-CEBPD_MA0836.3 8 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 120 bp overlap
CHD4 2 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 341 bp overlap
ChIP RH5 GSE155861.CHD4.RH5 197 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 171 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 196 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 225 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 161 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 3 datasets
ChIP SF8628 GSE94834.EZH2.SF8628 256 bp overlap
ChIP neural progenitor cell ENCFF018MKA 383 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 260 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 230 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 305 bp overlap
FOXB1 1 dataset
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_24h DE_24h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_24h DE_24h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_24h DE_24h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_24h DE_24h-FOXE1_MA1487.3 12 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 236 bp overlap
FOXS1 1 dataset
Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap
Foxl2 1 dataset
Motif DE_24h DE_24h-Foxl2_MA1607.2 10 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 134 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 294 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 322 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 357 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 260 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 267 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 287 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 66 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 118 bp overlap
HLF 3 datasets
Motif DE_24h DE_24h-HLF_MA0043.4 9 bp overlap
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 137 bp overlap
ChIP HepG2 ENCFF854JLR 245 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 166 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 198 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 383 bp overlap
IKZF3 3 datasets
ChIP HEK293 ENCFF518OXG 347 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 242 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 359 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 237 bp overlap
KDM1A 8 datasets
ChIP H1 ENCFF696SGD 345 bp overlap
ChIP HepG2 ENCFF240UWG 383 bp overlap
ChIP HepG2 ENCFF240UWG 209 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 250 bp overlap
ChIP K-562 ENCSR000ATX.KDM1A.K-562 216 bp overlap
ChIP K562 ENCFF128TYE 334 bp overlap
ChIP K562 ENCFF934ZRG 350 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 238 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 273 bp overlap
MAZ 4 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 ENCFF994GSG 226 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 331 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 171 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 137 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 319 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94782.MYCN.Kelly 145 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 240 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 307 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 251 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 123 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 303 bp overlap
NFIL3 1 dataset
Motif DE_24h DE_24h-NFIL3_MA0025.3 9 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 195 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PAX5 5 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 213 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 163 bp overlap
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 165 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 158 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 296 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 76 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 276 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 234 bp overlap
POU3F1 1 dataset
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F3 1 dataset
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 173 bp overlap
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 275 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 383 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 272 bp overlap
POU5F1B 1 dataset
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 241 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCFF283AJL 131 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 172 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 209 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 311 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 310 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 241 bp overlap
RUVBL1 1 dataset
ChIP Hep-G2 GSE97661.RUVBL1.Hep-G2 147 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 112 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 214 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 144 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 383 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 300 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 304 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 363 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 335 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 373 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 180 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
SUZ12 2 datasets
ChIP hiPSC GSE124903.SUZ12.hiPSC 383 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 383 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 190 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 299 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 169 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 233 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 288 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 383 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 383 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 221 bp overlap
WT1 3 datasets
ChIP HEK293 ENCFF906HIR 383 bp overlap
ChIP HEK293 ENCFF906HIR 217 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 319 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 261 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 298 bp overlap
ZBED4 1 dataset
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 383 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 286 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 383 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
ChIP HEK293T GSE78099.ZNF263.HEK293T 168 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 383 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 377 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 290 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 383 bp overlap
ZNF398 2 datasets
ChIP H9 GSE133630.ZNF398.H9 183 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 243 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCFF937QHI 357 bp overlap
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 217 bp overlap
ZNF444 1 dataset
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 296 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 171 bp overlap
ZNF549 1 dataset
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 341 bp overlap
ZNF624 1 dataset
ChIP HEK293 ENCFF047ICX 180 bp overlap
ZNF770 4 datasets
ChIP HEK293 ENCFF468FCG 322 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 383 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 267 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 203 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
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