chr12 : 53,223,331 – 53,223,658
327 bp 115 TFs 1 linked gene
This 327 bp open chromatin element is linked to RARG and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RARG 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:53,218,331 – 53,228,658
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 323 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 304 bp overlap
ChIP H1 ENCFF399KAM 105 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 327 bp overlap
ATF4 1 dataset
ChIP HepG2 ENCFF903ADR 323 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 315 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 327 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 327 bp overlap
BRD2 3 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 327 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 184 bp overlap
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 264 bp overlap
BRD4 18 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 82 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 51 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 265 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 327 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 327 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 289 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 322 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 327 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 327 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 229 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 327 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 175 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 104 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 160 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 224 bp overlap
ChIP hESC GSE33281.BRD4.hESC 90 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 327 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 117 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 86 bp overlap
CDK7 2 datasets
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 207 bp overlap
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 67 bp overlap
CEBPA 2 datasets
ChIP HepG2 ENCFF175DFS 232 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 183 bp overlap
CEBPB 6 datasets
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF074JWB 190 bp overlap
ChIP IMR-90 ENCFF468UGY 209 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 171 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 204 bp overlap
ChIP hMSC GSE68864.CEBPB.hMSC 190 bp overlap
CEBPD 1 dataset
ChIP Hep-G2 ENCSR000BQJ.CEBPD.Hep-G2 116 bp overlap
CEBPG 1 dataset
ChIP HepG2 ENCFF503XBC 227 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 127 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 242 bp overlap
CTCF 2 datasets
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 327 bp overlap
CTCFL 1 dataset
Motif DE_24h DE_24h-CTCFL_MA1102.3 8 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 193 bp overlap
ChIP BLaER1 ENCFF274GAT 147 bp overlap
ChIP BLaER1 ENCFF335XTP 327 bp overlap
ChIP BLaER1 ENCFF364PUR 82 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 67 bp overlap
ChIP H1 ENCFF785DWK 290 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 121 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 165 bp overlap
ERG 3 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 185 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 256 bp overlap
ChIP SEM GSE117864.ERG.SEM 219 bp overlap
ETS1 7 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 176 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 189 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 196 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 189 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 63 bp overlap
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 247 bp overlap
ChIP cardiomyocyte_D5 GSE129986.ETS1.cardiomyocyte_D5 109 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 135 bp overlap
FEZF2 1 dataset
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
FIP1L1 1 dataset
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 136 bp overlap
FLI1 2 datasets
ChIP UAE GSE23730.FLI1.UAE 310 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 306 bp overlap
FOXC1 1 dataset
ChIP HepG2 ENCFF882ISP 176 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 327 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 144 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 315 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 129 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 141 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 245 bp overlap
HIC1 3 datasets
ChIP HEK293 ENCFF252CFL 94 bp overlap
ChIP HEK293 ENCFF252CFL 327 bp overlap
ChIP HEK293 ENCFF252CFL 116 bp overlap
HNRNPK 3 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 322 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 319 bp overlap
ChIP HepG2 ENCFF493GNS 327 bp overlap
HNRNPL 1 dataset
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 179 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 139 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 138 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 238 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 262 bp overlap
KLF4 2 datasets
ChIP PDAC GSE64557.KLF4.PDAC 138 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 110 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 143 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 327 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 74 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 242 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 219 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 129 bp overlap
MAZ 4 datasets
ChIP HEK293 ENCFF994GSG 327 bp overlap
ChIP IMR-90 ENCFF682IKN 256 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 327 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 133 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 327 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 307 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 92 bp overlap
NANOG 3 datasets
ChIP WA01 ERP004238.NANOG.WA01 198 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 102 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 307 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 274 bp overlap
NR1D1 1 dataset
Motif DE_24h DE_24h-NR1D1_MA1531.2 14 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 118 bp overlap
PATZ1 3 datasets
ChIP HEK293 ENCFF016MNJ 259 bp overlap
ChIP HepG2 ENCFF723PFC 279 bp overlap
ChIP SK-N-SH ENCFF650NCN 109 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 195 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 194 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 327 bp overlap
PGR 1 dataset
ChIP T-47D-A_R5020 GSE80358.PGR.T-47D-A_R5020 67 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 290 bp overlap
POLR2A 2 datasets
ChIP SK-N-MC ENCFF088IVG 319 bp overlap
ChIP vagina ENCFF384GAB 67 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 153 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 307 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 187 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 209 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 289 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 218 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 327 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 327 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 296 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 75 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 140 bp overlap
RBFOX2 1 dataset
ChIP K-562 GSE120104.RBFOX2.K-562 161 bp overlap
RBM39 2 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 255 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 218 bp overlap
RELA 4 datasets
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 79 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 165 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 131 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 220 bp overlap
REST 2 datasets
ChIP CD4 GSE49570.REST.CD4 115 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 95 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 59 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 231 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 227 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 243 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 155 bp overlap
SKI 1 dataset
ChIP HL-60 GSE107553.SKI.HL-60 190 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 327 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 327 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 198 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 184 bp overlap
SMARCA4 6 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 112 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 94 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 327 bp overlap
ChIP NCI-H1703 GSE121755.SMARCA4.NCI-H1703 272 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 284 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 209 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 184 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 222 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 327 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 176 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 269 bp overlap
SRSF1 3 datasets
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 305 bp overlap
ChIP HepG2 ENCFF509LHO 327 bp overlap
ChIP HepG2 ENCFF666RVW 327 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 205 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 120 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 253 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 113 bp overlap
TP53 1 dataset
ChIP HCT-116_IR GSE60267.TP53.HCT-116_IR 98 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 196 bp overlap
VEZF1 3 datasets
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
ChIP K-562 ENCSR189YMA.VEZF1.K-562 293 bp overlap
ChIP K562 ENCFF053XDV 208 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 317 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BKU.YY1.K-562 83 bp overlap
ZBTB2 1 dataset
ChIP HepG2 ENCFF605PMZ 241 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 64 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 266 bp overlap
ZBTB7A 5 datasets
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 211 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 218 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 323 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 327 bp overlap
ChIP K562 ENCFF579ZGM 327 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 83 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 327 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 219 bp overlap
ZKSCAN3 1 dataset
Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 147 bp overlap
ZNF148 1 dataset
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF157 1 dataset
ChIP HEK293 ENCFF799MOR 154 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 69 bp overlap
ZNF282 1 dataset
Motif DE_24h DE_24h-ZNF282_MA1154.2 15 bp overlap
ZNF398 3 datasets
ChIP H9 GSE133630.ZNF398.H9 168 bp overlap
ChIP HEK293 ENCFF184XEW 314 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 281 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 125 bp overlap
ZNF530 1 dataset
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
ZNF707 1 dataset
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 240 bp overlap
ZNF740 3 datasets
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
ChIP K562 ENCFF505NFV 327 bp overlap
ChIP K562 ENCFF913GVQ 248 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 327 bp overlap
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