chr12 : 24,953,929 24,954,769
840 bp 128 TFs 5 linked genes
This 840 bp open chromatin element is linked to 5 target genes and is bound by 128 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ENSG00000255921 4.8 kb Proximal Proximity
BCAT1 4.8 kb Proximal Proximity
DNAI7 240.7 kb Distal Multiome
ETFRF1 240.8 kb Distal Multiome
KRAS 296.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:24,948,929 – 24,959,769
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
128 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 569 bp overlap
ChIP K562 ENCFF938UXQ 367 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 178 bp overlap
ATF3 4 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 493 bp overlap
ChIP K-562 ENCSR632DCH.ATF3.K-562 268 bp overlap
ChIP K562 ENCFF604FPV 178 bp overlap
ChIP K562 ENCFF921JQW 665 bp overlap
ATF7 3 datasets
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 286 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 218 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 273 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 208 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 242 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BACH1 2 datasets
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
Motif DE_72h DE_72h-BACH1_MA1633.2 9 bp overlap
BRD4 5 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 201 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 141 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 840 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 832 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 362 bp overlap
CBFA2T2 2 datasets
ChIP K562 ENCFF963TXY 381 bp overlap
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 460 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CCNT2 2 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 247 bp overlap
ChIP K562 ENCFF199GSZ 425 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 227 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 192 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 469 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 577 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 335 bp overlap
ChIP K562 ENCFF403WPG 545 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 436 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 322 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 424 bp overlap
ChIP K562 ENCFF739JDE 497 bp overlap
ChIP K562 ENCFF775HUO 337 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 384 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 154 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 237 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 400 bp overlap
FOS::JUNB 2 datasets
Motif DE_60h DE_60h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_72h DE_72h-FOSJUNB_MA1134.2 9 bp overlap
FOS::JUND 2 datasets
Motif DE_60h DE_60h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_72h DE_72h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 2 datasets
Motif DE_60h DE_60h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_72h DE_72h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1 2 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 428 bp overlap
ChIP K562 ENCFF455MKD 292 bp overlap
FOSL1::JUN 2 datasets
Motif DE_60h DE_60h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_72h DE_72h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 2 datasets
Motif DE_60h DE_60h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_72h DE_72h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL1::JUND 2 datasets
Motif DE_60h DE_60h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_72h DE_72h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 2 datasets
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
FOSL2::JUN 2 datasets
Motif DE_60h DE_60h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_72h DE_72h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 2 datasets
Motif DE_60h DE_60h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_72h DE_72h-FOSL2JUNB_MA1138.2 9 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 266 bp overlap
ChIP DE DE-FOXA2-1 528 bp overlap
ChIP DE DE-FOXA2-2 484 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 260 bp overlap
GATA1 5 datasets
ChIP K-562 GSE107726.GATA1.K-562 569 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 246 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 224 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 326 bp overlap
GATA2 4 datasets
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 415 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 293 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 336 bp overlap
GATA3 3 datasets
ChIP Kelly GSE65664.GATA3.Kelly 390 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 343 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 341 bp overlap
GATA4 7 datasets
ChIP A-549 GSE85002.GATA4.A-549 475 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 424 bp overlap
ChIP DE DE-GATA4-1 772 bp overlap
ChIP DE DE-GATA4-2 836 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 821 bp overlap
ChIP foregut GSE117136.GATA4.foregut 656 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 515 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 244 bp overlap
ChIP DE DE-GATA6-1 737 bp overlap
ChIP DE DE-GATA6-2 737 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 813 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 401 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 701 bp overlap
ChIP foregut GSE117136.GATA6.foregut 706 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 379 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 419 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 360 bp overlap
GMEB1 2 datasets
ChIP K-562 ENCSR928KOR.GMEB1.K-562 269 bp overlap
ChIP K562 ENCFF705LHX 601 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 177 bp overlap
HDAC1 5 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 579 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 293 bp overlap
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 115 bp overlap
ChIP K562 ENCFF928TKZ 457 bp overlap
ChIP K562 ENCFF968WBH 521 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 550 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 458 bp overlap
ChIP K562 ENCFF744ALD 146 bp overlap
ChIP K562 ENCFF919OMP 511 bp overlap
HOXA9 1 dataset
ChIP HEK293-FT GSE62586.HOXA9.HEK293-FT 176 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 687 bp overlap
ChIP K562 ENCFF348IBL 549 bp overlap
ChIP K562 ENCFF771OHZ 408 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 251 bp overlap
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 79 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 488 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 276 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 323 bp overlap
ChIP K-562 ENCSR000EFS.JUN.K-562 138 bp overlap
JUN::JUNB 2 datasets
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_72h DE_72h-JUNJUNB_MA1132.2 8 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 225 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 292 bp overlap
ChIP K562 ENCFF830LVJ 281 bp overlap
KDM1A 6 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 389 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 339 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 234 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 171 bp overlap
ChIP K562 ENCFF128TYE 461 bp overlap
ChIP K562 ENCFF133OLU 461 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCFF558HSJ 405 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 276 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 187 bp overlap
Lef1 1 dataset
Motif DE_72h DE_72h-Lef1_MA0768.3 8 bp overlap
MAFF 2 datasets
ChIP K-562 ENCSR000EGI.MAFF.K-562 165 bp overlap
ChIP K562 ENCFF071YKK 281 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 486 bp overlap
ChIP K562 ENCFF455EEO 170 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 235 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 330 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 254 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 727 bp overlap
MTA1 2 datasets
ChIP K-562 ENCSR807BGP.MTA1.K-562 552 bp overlap
ChIP K562 ENCFF230ZKA 445 bp overlap
MTA2 2 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 514 bp overlap
ChIP K562 ENCFF880VZB 341 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 282 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 421 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 317 bp overlap
NBN 2 datasets
ChIP GM12878 ENCSR278SQL.NBN.GM12878 427 bp overlap
ChIP K-562 ENCSR085QEV.NBN.K-562 218 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 220 bp overlap
ChIP K562 ENCFF866HRM 445 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 670 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 576 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 607 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 237 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 571 bp overlap
NFE2 4 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 405 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 177 bp overlap
ChIP K562 ENCFF047YKA 261 bp overlap
ChIP K562 ENCFF163BSI 265 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 562 bp overlap
NUTM1 2 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 840 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 247 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 370 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 506 bp overlap
PRDM1 2 datasets
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
ChIP HEK293 ENCFF302TBP 421 bp overlap
PRDM10 4 datasets
ChIP HEK293 ENCFF145WQQ 266 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 241 bp overlap
ChIP K562 ENCFF740YLK 417 bp overlap
ChIP K562 ENCFF740YLK 406 bp overlap
PRDM9 3 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 828 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 611 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 277 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 622 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 444 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 581 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 232 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 530 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 332 bp overlap
ChIP K562 ENCFF506JCB 195 bp overlap
SMARCC2 2 datasets
ChIP K562 ENCFF368GSR 497 bp overlap
ChIP K562 ENCFF368GSR 449 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 733 bp overlap
ChIP K562 ENCFF690CFF 293 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 365 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 385 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 443 bp overlap
ChIP K562 ENCFF059YCJ 258 bp overlap
SP5_Zebrafish 2 datasets
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 238 bp overlap
ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 262 bp overlap
SRF 3 datasets
Motif DE_72h DE_72h-SRF_MA0083.3 16 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 290 bp overlap
ChIP K562 ENCFF766EOO 397 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
TAL1 1 dataset
ChIP K-562 ENCSR106FRG.TAL1.K-562 252 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 443 bp overlap
ZEB2 4 datasets
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 235 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 313 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 448 bp overlap
ChIP K562 ENCFF795CMH 477 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 329 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 441 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 466 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 162 bp overlap
ZNF24 2 datasets
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 249 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 471 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 417 bp overlap
ZNF354A 1 dataset
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF410 1 dataset
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 840 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 168 bp overlap
ZNF671 1 dataset
ChIP HEK293T GSE78099.ZNF671.HEK293T 255 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 501 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 404 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 273 bp overlap
ZXDB 3 datasets
ChIP HEK293 ENCFF835SGA 525 bp overlap
ChIP HEK293 ENCFF835SGA 525 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 444 bp overlap