chr11 : 40,168,339 40,168,779
440 bp 183 TFs 0 linked genes
This 440 bp open chromatin element has no linked target genes and is bound by 183 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:40,163,339 – 40,173,779
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
183 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap
ARID3A 3 datasets
ChIP GM12878 ENCFF006WWZ 240 bp overlap
ChIP GM12878 ENCSR725LYT.ARID3A.GM12878 143 bp overlap
ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 208 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 227 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 344 bp overlap
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Arid3b 1 dataset
Motif DE_12h DE_12h-Arid3b_MA0601.2 7 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BACH1 3 datasets
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
ChIP GM12878 ENCFF576UEQ 271 bp overlap
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 206 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 135 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 256 bp overlap
BHLHE40 5 datasets
ChIP GM12878 ENCFF010ZUU 260 bp overlap
ChIP GM12878 ENCFF521IZR 121 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 410 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 236 bp overlap
ChIP GM12878 ENCSR000DZJ.BHLHE40.GM12878 159 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 262 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD4 1 dataset
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 259 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 117 bp overlap
CHD2 1 dataset
ChIP GM12878 ENCFF697XCL 287 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 365 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 314 bp overlap
CUX1 1 dataset
ChIP GM12878 ENCFF064TOM 266 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 272 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 440 bp overlap
DRGX 1 dataset
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCFF692SMY 306 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 183 bp overlap
EMX1 1 dataset
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 133 bp overlap
EP300 4 datasets
ChIP GM12878 ENCFF039QRE 278 bp overlap
ChIP GM12878 ENCFF242HCG 261 bp overlap
ChIP GM12878 ENCSR000DZG.EP300.GM12878 267 bp overlap
ChIP GM12878 ENCSR000DZD.EP300.GM12878 144 bp overlap
ESX1 1 dataset
Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 150 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 120 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 440 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 379 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 423 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GSX1 1 dataset
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 162 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
HOXA1 1 dataset
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB1 1 dataset
Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXB5 1 dataset
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXC8 1 dataset
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 289 bp overlap
ChIP GM12878 ENCFF824TGK 248 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 272 bp overlap
ChIP GM12878 ENCFF918AID 224 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 283 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 277 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF4 2 datasets
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 158 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 198 bp overlap
ISX 1 dataset
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 360 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 264 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 435 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 435 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 258 bp overlap
LHX5 1 dataset
Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
Lhx4 1 dataset
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 194 bp overlap
MEOX1 1 dataset
Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MIXL1 1 dataset
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 338 bp overlap
MNX1 1 dataset
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
MRTFA 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFA.A-673-clone-Asp114 240 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 374 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 361 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 440 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
ChIP GM12878 ENCFF666NJR 376 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 299 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 154 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 329 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCFF340KVJ 199 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 234 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NIPBL 2 datasets
ChIP GM12878 GSE93080.NIPBL.GM12878 192 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 272 bp overlap
NKX6-1 2 datasets
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NOTO 1 dataset
Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 325 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 213 bp overlap
PAX4 1 dataset
Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 142 bp overlap
PDX1 1 dataset
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
POLR2A 1 dataset
ChIP GM12878 ENCFF263VRI 440 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 139 bp overlap
POU6F1 2 datasets
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 254 bp overlap
PRRX1 1 dataset
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD51 2 datasets
ChIP GM12878 ENCFF916JXQ 371 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 262 bp overlap
RAX2 1 dataset
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 245 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 349 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
SHOX 1 dataset
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
SIN3A 2 datasets
ChIP PFSK-1 ENCFF218MAY 236 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 211 bp overlap
SKIL 2 datasets
ChIP GM12878 ENCFF171OVM 339 bp overlap
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 190 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 440 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 327 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 380 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 264 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 278 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 375 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 253 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 394 bp overlap
SPI1 1 dataset
ChIP GM12878 ENCFF134LCP 152 bp overlap
SPIB 4 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 178 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 304 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 317 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 171 bp overlap
Shox2 1 dataset
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TARDBP 2 datasets
ChIP GM12878 ENCFF866POT 324 bp overlap
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 237 bp overlap
TBP 1 dataset
ChIP GM12878 ENCFF571OXR 334 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 3 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCFF951HUW 305 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 440 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCFF433DMU 269 bp overlap
ChIP GM12878 ENCSR725VFL.TCF12.GM12878 207 bp overlap
TCF4 1 dataset
ChIP LS180 GSE31939.TCF4.LS180 105 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 139 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
TLX2 1 dataset
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
TRIM22 2 datasets
ChIP GM12878 ENCFF919OMX 346 bp overlap
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 370 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
UNCX 1 dataset
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF24 2 datasets
ChIP GM12878 ENCFF688STO 295 bp overlap
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 210 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF792 1 dataset
ChIP HEK293T GSE78099.ZNF792.HEK293T 203 bp overlap
mix-a 1 dataset
Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap