chr9 : 111,529,772 111,530,366
594 bp 136 TFs 5 linked genes
This 594 bp open chromatin element is linked to 5 target genes and is bound by 136 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ZNF483 4.6 kb Proximal Proximity
ECPAS 45.6 kb Distal Multiome
PTGR1 69.9 kb Distal Multiome
DNAJC25 101.3 kb Distal Multiome
GNG10 131.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:111,524,772 – 111,535,366
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
136 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 403 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 325 bp overlap
ChIP H1 ENCFF399KAM 594 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 114 bp overlap
ATF2 3 datasets
ChIP H1 ENCFF295GZO 571 bp overlap
ChIP H1 ENCFF295GZO 383 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 594 bp overlap
Arid5a 1 dataset
Motif ES_0h ES_0h-Arid5a_MA0602.2 8 bp overlap
Bcl11B 1 dataset
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CDX2 1 dataset
Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 271 bp overlap
ChIP H1 ENCFF126NLU 587 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 162 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 343 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 275 bp overlap
Dux 1 dataset
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 254 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 75 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
Esrrg 1 dataset
Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap
FLI1 6 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 309 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 250 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 183 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 278 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 260 bp overlap
ChIP SK-N-MC_SHGFP_96H GSE61944.FLI1.SK-N-MC_SHGFP_96H 120 bp overlap
FOXB1 1 dataset
Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 231 bp overlap
GRHL2 1 dataset
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 231 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
HOXC13 1 dataset
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 245 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 291 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 297 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAX 2 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 323 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 373 bp overlap
MEF2A 1 dataset
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif ES_0h ES_0h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif ES_0h ES_0h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif ES_0h ES_0h-MEF2D_MA0773.1 12 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 405 bp overlap
MXI1 2 datasets
ChIP H1 ENCFF963FZS 337 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 193 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 133 bp overlap
Msgn1 1 dataset
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 176 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 317 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 496 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 474 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 316 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 594 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 473 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 523 bp overlap
ChIP hESC GSE18292.NANOG.hESC 278 bp overlap
ChIP hESC GSE20650.NANOG.hESC 222 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 168 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 359 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 229 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 282 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 297 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 304 bp overlap
NKX2-4 1 dataset
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
NR2C1 1 dataset
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA0017.3 12 bp overlap
NR2F2 1 dataset
Motif ES_0h ES_0h-NR2F2_MA1111.2 7 bp overlap
NR4A1 2 datasets
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nkx2-1 1 dataset
Motif ES_0h ES_0h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 1 dataset
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 2 datasets
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PBX2 1 dataset
Motif ES_0h ES_0h-PBX2_MA1113.3 9 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 528 bp overlap
ChIP H1 ENCFF566JSR 324 bp overlap
ChIP SK-N-MC ENCFF088IVG 338 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 13 datasets
ChIP GM23338 ENCFF333SNB 245 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 514 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 443 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 397 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 165 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 349 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 346 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 237 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 410 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 418 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 241 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 261 bp overlap
POU6F2 1 dataset
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PRDM1 1 dataset
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 136 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Ppara 1 dataset
Motif ES_0h ES_0h-Ppara_MA2338.1 7 bp overlap
Prdm4 1 dataset
Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 434 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 479 bp overlap
RARA 1 dataset
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 174 bp overlap
RFX1 4 datasets
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
Motif ES_0h ES_0h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 322 bp overlap
ChIP K562 ENCFF421AVO 465 bp overlap
RFX2 2 datasets
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
Motif ES_0h ES_0h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
Motif ES_0h ES_0h-RFX3_MA0798.3 16 bp overlap
RFX5 2 datasets
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
Motif ES_0h ES_0h-RORB_MA1150.2 10 bp overlap
Rarb 2 datasets
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
Rarg 2 datasets
Motif ES_0h ES_0h-Rarg_MA0859.2 15 bp overlap
Motif ES_0h ES_0h-Rarg_MA0859.2 15 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
Runx1 1 dataset
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 439 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 279 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 356 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 147 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 193 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 220 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 179 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 185 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 524 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 365 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 371 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 394 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 224 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 291 bp overlap
SMARCC1 6 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 106 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 171 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 188 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 213 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 235 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 284 bp overlap
SOX2 3 datasets
ChIP hESC GSE69479.SOX2.hESC 279 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 359 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 361 bp overlap
SOX21 1 dataset
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 295 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 424 bp overlap
STAT3 2 datasets
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Stat2 2 datasets
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TBP 5 datasets
Motif ES_0h ES_0h-TBP_MA0108.3 7 bp overlap
ChIP hESC GSE122298.TBP.hESC 221 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 122 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 221 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 120 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 119 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
THRA 1 dataset
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 122 bp overlap
VEZF1 1 dataset
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF454 1 dataset
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 203 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 180 bp overlap
ZNF574 1 dataset
Motif ES_0h ES_0h-ZNF574_MA1982.2 14 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF740 1 dataset
Motif ES_0h ES_0h-ZNF740_MA0753.3 10 bp overlap
ZNF75A 1 dataset
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF768 1 dataset
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap