chr6 : 105,985,669 – 105,986,371
702 bp 105 TFs 1 linked gene
This 702 bp open chromatin element is linked to PRDM1 and is bound by 105 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRDM1 7.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:105,980,669 – 105,991,371
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 86 bp overlap
AFF4 3 datasets
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 199 bp overlap
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 168 bp overlap
ChIP HeLa GSE40632.AFF4.HeLa 149 bp overlap
AR 4 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 306 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 282 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 235 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 388 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 345 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 702 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 324 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 506 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 672 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 667 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 236 bp overlap
BRD4 3 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 702 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 367 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 325 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 225 bp overlap
CBFB 3 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 331 bp overlap
ChIP WTC11 ENCFF113HIY 309 bp overlap
ChIP WTC11 ENCFF113HIY 103 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 471 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 225 bp overlap
ChIP H1 ENCFF998XEK 283 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 702 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 114 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 131 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 366 bp overlap
CTCF 2 datasets
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 282 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 105 bp overlap
CTNNB1 1 dataset
ChIP LS180 GSE31939.CTNNB1.LS180 91 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 274 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
EED 2 datasets
ChIP ProEs GSE59087.EED.ProEs 79 bp overlap
ChIP ProEs GSE59087.EED.ProEs 503 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 217 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 440 bp overlap
ERG 6 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 208 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 322 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 270 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 333 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 278 bp overlap
ESR1 5 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 285 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 299 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 57 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 159 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 149 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 198 bp overlap
EZH2 23 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 493 bp overlap
ChIP GM23338 ENCFF613YON 501 bp overlap
ChIP GM23338 ENCFF613YON 224 bp overlap
ChIP GM23338 ENCFF886DXX 187 bp overlap
ChIP H1 ENCFF232NZA 702 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 386 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 329 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 702 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 248 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 242 bp overlap
ChIP Pfeiffer GSE45982.EZH2.Pfeiffer 285 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 209 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 367 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 702 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 294 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 175 bp overlap
ChIP hESC GSE113817.EZH2.hESC 403 bp overlap
ChIP hepatocyte ENCFF552DZB 700 bp overlap
ChIP hepatocyte ENCFF552DZB 604 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 702 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 510 bp overlap
ChIP neural progenitor cell ENCFF018MKA 250 bp overlap
ChIP neural progenitor cell ENCFF018MKA 162 bp overlap
EZH2_phosphoT487 3 datasets
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 525 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 408 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 702 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FEZF1 2 datasets
ChIP HEK293 GSE76494.FEZF1.HEK293 286 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 211 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 56 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 255 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 419 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 325 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 120 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 295 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 279 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 211 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 254 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 262 bp overlap
JARID2 8 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 702 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 702 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 448 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 506 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 702 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 702 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 702 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 702 bp overlap
JUN 4 datasets
ChIP 786-O GSE86092.JUN.786-O 197 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 282 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 188 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 427 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 500 bp overlap
ChIP H1 ENCFF078LED 294 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 679 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 292 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 62 bp overlap
KMT2A 2 datasets
ChIP MV4-11 GSE83671.KMT2A.MV4-11 256 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 275 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MED1 1 dataset
ChIP CD4_Th1_BAY GSE62482.MED1.CD4_Th1_BAY 182 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 239 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 383 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 274 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 201 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 702 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 81 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 71 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 96 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 702 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 349 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 298 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 327 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 256 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 587 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 468 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 134 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 208 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF706IUS 376 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 313 bp overlap
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 106 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 532 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 702 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 298 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 363 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 140 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 51 bp overlap
RAD21 1 dataset
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 284 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 468 bp overlap
RELA 2 datasets
ChIP CD4_Th1_BAY GSE62482.RELA.CD4_Th1_BAY 217 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 365 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 233 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 192 bp overlap
RUNX1 8 datasets
ChIP AML GSE111821.RUNX1.AML 242 bp overlap
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 135 bp overlap
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 68 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 450 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 135 bp overlap
ChIP CD34_FETAL GSE70660.RUNX1.CD34_FETAL 167 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 229 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 289 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 361 bp overlap
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 237 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 536 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 225 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 102 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 150 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 168 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 131 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 323 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 220 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 702 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 683 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 180 bp overlap
SPI1 6 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 230 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 125 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 166 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 245 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 115 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 158 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 702 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 162 bp overlap
STAT3 1 dataset
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 135 bp overlap
SUZ12 8 datasets
ChIP H1 ENCFF881NFR 702 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 179 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 702 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 330 bp overlap
ChIP NT2/D1 ENCFF574SXS 531 bp overlap
ChIP NT2/D1 ENCFF574SXS 306 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 702 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 508 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 287 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 195 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 232 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 182 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 388 bp overlap
ZBTB16 1 dataset
ChIP KG-1_shEZH2 GSE109619.ZBTB16.KG-1_shEZH2 188 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 166 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 56 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 158 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 121 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 411 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 199 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 363 bp overlap
ZNF506 1 dataset
ChIP HEK293T GSE78099.ZNF506.HEK293T 292 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 292 bp overlap
Huangfu Lab · Publications · Resources · Contact