chr5 : 87,787,632 87,788,169
537 bp 149 TFs 0 linked genes
This 537 bp open chromatin element has no linked target genes and is bound by 149 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:87,782,632 – 87,793,169
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
149 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 464 bp overlap
ASCL1 1 dataset
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 347 bp overlap
ATF2 6 datasets
Motif ES_0h ES_0h-ATF2_MA1632.2 10 bp overlap
ChIP H1 ENCFF295GZO 215 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 191 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF955VER 234 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 431 bp overlap
ATF3 1 dataset
Motif ES_0h ES_0h-ATF3_MA0605.3 10 bp overlap
ATF4 1 dataset
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
ATF7 1 dataset
Motif ES_0h ES_0h-ATF7_MA0834.2 10 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Arid5a 1 dataset
Motif ES_0h ES_0h-Arid5a_MA0602.2 8 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BARX2 1 dataset
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 391 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 344 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 500 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 391 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 390 bp overlap
BRD3 1 dataset
ChIP K-562_dilution-6-100 GSE140325.BRD3.K-562_dilution-6-100 105 bp overlap
BRD4 3 datasets
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 293 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 228 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 211 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 122 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 151 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 487 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 236 bp overlap
CREB1 5 datasets
Motif ES_0h ES_0h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 289 bp overlap
ChIP H1 ENCFF955PMP 309 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 250 bp overlap
CTCF 3 datasets
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 351 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 167 bp overlap
CTCFL 1 dataset
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 393 bp overlap
CUX1 1 dataset
Motif ES_0h ES_0h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif ES_0h ES_0h-CUX2_MA0755.2 9 bp overlap
Creb5 1 dataset
Motif ES_0h ES_0h-Creb5_MA0840.2 10 bp overlap
Crx 1 dataset
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
DBP 1 dataset
Motif ES_0h ES_0h-DBP_MA0639.2 10 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dmbx1 1 dataset
Motif ES_0h ES_0h-Dmbx1_MA0883.2 10 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 129 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 390 bp overlap
ChIP hESC GSE17917.EP300.hESC 414 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 537 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
Motif ES_0h ES_0h-FOS_MA1951.2 13 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 290 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 286 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 274 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 376 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 273 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 469 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 140 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HMBOX1 1 dataset
Motif ES_0h ES_0h-HMBOX1_MA0895.2 7 bp overlap
HOXA10 1 dataset
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
JDP2 1 dataset
Motif ES_0h ES_0h-JDP2_MA0656.2 10 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 314 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 415 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 481 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 514 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 462 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 503 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 437 bp overlap
JUNB 1 dataset
Motif ES_0h ES_0h-JUNB_MA1140.3 11 bp overlap
JUND 3 datasets
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 256 bp overlap
KLF13 1 dataset
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 297 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 218 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 148 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 432 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 514 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
Msgn1 1 dataset
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 356 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 452 bp overlap
ChIP H1 ENCFF747ZPQ 283 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 537 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 537 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 484 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 537 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 537 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 537 bp overlap
ChIP hESC GSE20650.NANOG.hESC 491 bp overlap
ChIP hESC GSE18292.NANOG.hESC 432 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 537 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 307 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 197 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 188 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 284 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 236 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 490 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
ONECUT1 3 datasets
Motif ES_0h ES_0h-ONECUT1_MA0679.3 9 bp overlap
ChIP H9 ERP004206.ONECUT1.H9 537 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 333 bp overlap
OTX1 1 dataset
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 195 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 481 bp overlap
PITX1 1 dataset
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
POU5F1 14 datasets
ChIP BG03 GSE21614.POU5F1.BG03 268 bp overlap
ChIP GM23338 ENCFF333SNB 145 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 537 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 537 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 537 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 417 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 316 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 487 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 425 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 430 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 537 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 402 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 420 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 195 bp overlap
Prdm4 1 dataset
Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 299 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 386 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 192 bp overlap
RARA 3 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 210 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 499 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 406 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RHOXF1 1 dataset
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 234 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 239 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 499 bp overlap
SALL3 2 datasets
ChIP hiPSC GSE104863.SALL3.hiPSC 190 bp overlap
ChIP hiPSC GSE104863.SALL3.hiPSC 211 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 132 bp overlap
SIX1 2 datasets
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SIX5 2 datasets
ChIP H1 ENCFF942SOJ 237 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 299 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 310 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 297 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 251 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 425 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 531 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 535 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 416 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 349 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 280 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 525 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 515 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX15 1 dataset
Motif ES_0h ES_0h-SOX15_MA1152.2 7 bp overlap
SOX2 7 datasets
ChIP H9 GSE46837.SOX2.H9 369 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 275 bp overlap
ChIP hESC GSE18292.SOX2.hESC 159 bp overlap
ChIP hESC GSE69479.SOX2.hESC 420 bp overlap
ChIP hESC GSE18292.SOX2.hESC 130 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 500 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 517 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 497 bp overlap
SOX8 1 dataset
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 175 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 454 bp overlap
SRF 1 dataset
ChIP H1 ENCFF036PEF 209 bp overlap
Six4 2 datasets
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 227 bp overlap
TCF12 3 datasets
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 416 bp overlap
TCF3 2 datasets
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 349 bp overlap
TCF7 1 dataset
Motif ES_0h ES_0h-TCF7_MA0769.3 7 bp overlap
TCF7L1 2 datasets
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TEF 1 dataset
Motif ES_0h ES_0h-TEF_MA0843.2 10 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 330 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 304 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 220 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 299 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF136 1 dataset
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 428 bp overlap
ZNF24 2 datasets
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF410 1 dataset
Motif ES_0h ES_0h-ZNF410_MA0752.2 16 bp overlap
ZNF418 1 dataset
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap