chr1 : 92,473,597 92,474,467
870 bp 137 TFs 3 linked genes
This 870 bp open chromatin element is linked to GFI1, RPAP2, and GLMN and is bound by 137 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
GFI1 6.0 kb Proximal Proximity
RPAP2 174.9 kb Distal Multiome
GLMN 175.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:92,468,597 – 92,479,467
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
137 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP CD4_Th1_BAY GSE62482.AFF4.CD4_Th1_BAY 120 bp overlap
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 207 bp overlap
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 190 bp overlap
ARNT 2 datasets
ChIP GM12878 ENCFF831TWO 432 bp overlap
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 367 bp overlap
ATF2 2 datasets
ChIP GM12878 ENCFF521LQJ 314 bp overlap
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 145 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 407 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 333 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BATF 2 datasets
ChIP GM12878 ENCFF954REE 186 bp overlap
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 251 bp overlap
BATF3 2 datasets
ChIP GM12878 GSE97661.BATF3.GM12878 135 bp overlap
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 283 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 271 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 193 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 161 bp overlap
BHLHE40 4 datasets
ChIP GM12878 ENCFF010ZUU 303 bp overlap
ChIP GM12878 ENCFF521IZR 252 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 327 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 324 bp overlap
BRD4 7 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 253 bp overlap
ChIP CD4_Th1_BAY GSE62482.BRD4.CD4_Th1_BAY 118 bp overlap
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 314 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 226 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 227 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 266 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 101 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 247 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 276 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCFF870CVH 294 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 323 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 249 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 716 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
E2F8 2 datasets
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 282 bp overlap
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 441 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 195 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 113 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 220 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCFF692SMY 374 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 203 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 514 bp overlap
EP300 2 datasets
ChIP GM12878 ENCFF039QRE 304 bp overlap
ChIP GM12878 ENCFF242HCG 276 bp overlap
ETV6 3 datasets
ChIP GM12878 ENCFF105ZMI 336 bp overlap
ChIP GM12878 GSE97661.ETV6.GM12878 399 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 272 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 202 bp overlap
FOXA1 1 dataset
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 202 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 493 bp overlap
ChIP DE DE-FOXA2-2 529 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 377 bp overlap
ChIP GM12878 ENCFF264DJE 99 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 490 bp overlap
ChIP DE DE-GATA4-2 510 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 478 bp overlap
ChIP DE DE-GATA6-2 539 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 314 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 434 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 335 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 342 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HDAC1 1 dataset
ChIP NB4 GSE126720.HDAC1.NB4 160 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF616FJX 492 bp overlap
ChIP GM12878 ENCFF753XDO 452 bp overlap
ChIP GM12878 ENCFF824TGK 444 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 287 bp overlap
ChIP GM12878 ENCFF918AID 288 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 460 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 406 bp overlap
INSM1 1 dataset
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
IRF4 4 datasets
ChIP B-cell GSE142493.IRF4.B-cell 507 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 198 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 156 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 533 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 692 bp overlap
JUN 2 datasets
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 373 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 271 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 618 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 125 bp overlap
KLF4 1 dataset
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
KMT2A 3 datasets
ChIP MV4-11 GSE83671.KMT2A.MV4-11 147 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 599 bp overlap
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 509 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 597 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 179 bp overlap
MEN1 2 datasets
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 113 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 705 bp overlap
MITF 7 datasets
ChIP 501-mel GSE137522.MITF.501-mel 333 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 256 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 377 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 323 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 317 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 313 bp overlap
ChIP K562 ENCFF731XJJ 281 bp overlap
MLLT3 1 dataset
ChIP THP-1 GSE79899.MLLT3.THP-1 266 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 469 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 342 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 348 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 89 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 469 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 580 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 295 bp overlap
NFATC1 1 dataset
ChIP GM12878 ENCFF023CAZ 418 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 444 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 420 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 315 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 351 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 442 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
ONECUT3 1 dataset
Motif DE_36h DE_36h-ONECUT3_MA0757.2 12 bp overlap
PAX3 1 dataset
Motif DE_36h DE_36h-PAX3_MA0780.1 10 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 157 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 199 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 367 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 323 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 541 bp overlap
POLR2A 3 datasets
ChIP GM12891 ENCFF379FCI 501 bp overlap
ChIP GM19193 ENCFF599VTO 525 bp overlap
ChIP HL-60 ENCFF321XKE 850 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 298 bp overlap
Pax7 1 dataset
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
RAD51 2 datasets
ChIP GM12878 ENCFF916JXQ 346 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 495 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 233 bp overlap
RELA 2 datasets
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 388 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 162 bp overlap
RELB 1 dataset
ChIP GM12878 ENCFF217ADF 367 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 67 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 188 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 500 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 367 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 404 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 446 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 305 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 435 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 522 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 384 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCFF327LDR 437 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 276 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 396 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 158 bp overlap
STAT5B 2 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 250 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 310 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 870 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 356 bp overlap
Sox17 1 dataset
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 324 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 4 datasets
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCFF951HUW 290 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 526 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 339 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 108 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 104 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 170 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
USF1 2 datasets
ChIP K-562 ENCSR000BKT.USF1.K-562 246 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 129 bp overlap
USF2 2 datasets
ChIP GM12878 ENCFF078SJX 266 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 433 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 172 bp overlap
ZBTB17 1 dataset
Motif DE_36h DE_36h-ZBTB17_MA2102.1 8 bp overlap
ZNF135 1 dataset
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF331 1 dataset
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF35 1 dataset
Motif DE_36h DE_36h-ZNF35_MA2333.1 7 bp overlap
ZNF680 1 dataset
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap