chr3 : 142,578,047 – 142,578,156
109 bp 92 TFs 1 linked gene
This 109 bp open chromatin element is linked to ATR and is bound by 92 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ATR 576 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:142,573,047 – 142,583,156
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 2 datasets
ChIP LTAD_EtOH GSE94577.AR.LTAD_EtOH 109 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 89 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 109 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 109 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 109 bp overlap
ATF2 5 datasets
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 109 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 105 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 109 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 109 bp overlap
ChIP K562 ENCFF139ZZG 109 bp overlap
ATF3 2 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 109 bp overlap
ChIP K562 ENCFF604FPV 83 bp overlap
ATF4 4 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 109 bp overlap
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 109 bp overlap
ChIP K-562 ENCSR145TSJ.ATF4.K-562 109 bp overlap
ChIP K562 ENCFF674KTF 109 bp overlap
ATF7 5 datasets
ChIP GM12878 ENCFF037PYH 109 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 109 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 109 bp overlap
ChIP HepG2 ENCFF470FKK 109 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 109 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 62 bp overlap
ChIP RKO GSE47190.BRD1.RKO 60 bp overlap
BRD2 5 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 109 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 109 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 92 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 109 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 109 bp overlap
BRD4 10 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 109 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 51 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 86 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 86 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 107 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 109 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 73 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 109 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 109 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 109 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 109 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 109 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 90 bp overlap
CREB1 8 datasets
ChIP GM12878 ENCFF870CVH 85 bp overlap
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 109 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 109 bp overlap
ChIP Hep-G2 ENCSR000BVL.CREB1.Hep-G2 89 bp overlap
ChIP K-562 ENCSR000BSO.CREB1.K-562 73 bp overlap
ChIP K562 ENCFF175LMX 109 bp overlap
ChIP MCF-7 ENCFF341ZEM 109 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 109 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 109 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 109 bp overlap
CTCF 1 dataset
ChIP endodermal cell ENCFF471YCZ 109 bp overlap
CUX1 2 datasets
ChIP MCF-7 ENCFF779ATB 109 bp overlap
ChIP MCF-7 ENCFF779ATB 79 bp overlap
E2F1 2 datasets
ChIP K-562 ENCSR720HUL.E2F1.K-562 109 bp overlap
ChIP K562 ENCFF191BFW 109 bp overlap
E2F6 1 dataset
ChIP H1 ENCFF785DWK 75 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 109 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 109 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 109 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 102 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 74 bp overlap
EP300 1 dataset
ChIP gastroesophageal sphincter ENCFF211FPL 109 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 109 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 109 bp overlap
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 61 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 109 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 109 bp overlap
FOXA1 2 datasets
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 87 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 109 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 109 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 109 bp overlap
GFI1 2 datasets
ChIP NB4 GSE128528.GFI1.NB4 109 bp overlap
ChIP THP-1 GSE90769.GFI1.THP-1 109 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 109 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 58 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 94 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 109 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 109 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 109 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 109 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 109 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 109 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 109 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 109 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 109 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 82 bp overlap
JUND 1 dataset
ChIP liver ENCSR196HGZ.JUND.liver 109 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 109 bp overlap
KDM1A 6 datasets
ChIP K-562 GSE117944.KDM1A.K-562 109 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 109 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 109 bp overlap
ChIP K562 ENCFF128TYE 109 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 109 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 109 bp overlap
KDM5A 1 dataset
ChIP HepG2 ENCFF105YGO 54 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 62 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 68 bp overlap
KMT2A 5 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 109 bp overlap
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 109 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 109 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 109 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 109 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 109 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 109 bp overlap
MED26 1 dataset
ChIP HCT-116 GSE121355.MED26.HCT-116 50 bp overlap
MEN1 3 datasets
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 107 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 109 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 109 bp overlap
MGA 2 datasets
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 52 bp overlap
ChIP K562 ENCFF140CEX 109 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 109 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 109 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 109 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 83 bp overlap
MYC 2 datasets
ChIP GP5D_SIRAD21 GSE51234.MYC.GP5D_SIRAD21 109 bp overlap
ChIP NB69 GSE138295.MYC.NB69 109 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 109 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 109 bp overlap
NR1H2 1 dataset
ChIP K562 ENCFF386VZB 109 bp overlap
ONECUT1 5 datasets
ChIP H9 ERP004206.ONECUT1.H9 109 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 109 bp overlap
ChIP HepG2 ENCFF243FIR 51 bp overlap
ChIP liver ERP002306.ONECUT1.liver 109 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 109 bp overlap
ONECUT2 3 datasets
ChIP A-549 GSE102599.ONECUT2.A-549 109 bp overlap
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 109 bp overlap
ChIP Hep-G2 ENCSR661PKJ.ONECUT2.Hep-G2 91 bp overlap
OVOL1 2 datasets
ChIP MCF-7 ENCFF537GWI 109 bp overlap
ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 109 bp overlap
PHF8 1 dataset
ChIP A-549 ENCSR541AOQ.PHF8.A-549 85 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 109 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 109 bp overlap
PRDM1 1 dataset
ChIP A549 ENCFF012KDW 67 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 109 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 109 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 66 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 103 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 63 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 109 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 64 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 83 bp overlap
SMARCA4 8 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 109 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 54 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 91 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 109 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 109 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 109 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 106 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 55 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 109 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 109 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 109 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 109 bp overlap
SP140L 1 dataset
ChIP Hep-G2 ENCSR107DKT.SP140L.Hep-G2 72 bp overlap
SPI1 2 datasets
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 106 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 76 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 63 bp overlap
STAT1 2 datasets
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 109 bp overlap
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 109 bp overlap
STAT3 15 datasets
ChIP FaDu_BB608 GSE78212.STAT3.FaDu_BB608 109 bp overlap
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 93 bp overlap
ChIP HCC1937 GSE152203.STAT3.HCC1937 109 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 104 bp overlap
ChIP HeLa-S3 ENCFF655DGU 109 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 60 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 109 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 109 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 109 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 55 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 92 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 109 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 95 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 101 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 109 bp overlap
STAT5B 2 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 109 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 109 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 91 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 81 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 59 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 67 bp overlap
YAP1 1 dataset
ChIP OVCAR-5 GSE57236.YAP1.OVCAR-5 109 bp overlap
ZBTB21 3 datasets
ChIP HEK293 ENCSR321MSF.ZBTB21.HEK293 109 bp overlap
ChIP Hep-G2 ENCSR549PAU.ZBTB21.Hep-G2 109 bp overlap
ChIP HepG2 ENCFF276JLT 109 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 109 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 58 bp overlap
ZHX3 1 dataset
ChIP HepG2 ENCFF631YWI 65 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 109 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 53 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 109 bp overlap
ZNF384 2 datasets
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 109 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 92 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 109 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 109 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 109 bp overlap
ZNF711 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 50 bp overlap
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