chr3 : 106,256,346 106,256,948
602 bp 107 TFs 0 linked genes
This 602 bp open chromatin element has no linked target genes and is bound by 107 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:106,251,346 – 106,261,948
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 524 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 394 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 264 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 253 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 602 bp overlap
BATF 2 datasets
ChIP GM12878 ENCFF954REE 144 bp overlap
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 102 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 364 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 243 bp overlap
BCLAF1 1 dataset
ChIP GM12878 ENCFF306JRM 255 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 206 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 452 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 201 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 217 bp overlap
BRD4 7 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 461 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 171 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 299 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 364 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 186 bp overlap
ChIP P493-6_MYC_0H GSE42262.BRD4.P493-6_MYC_0H 269 bp overlap
ChIP P493-6_MYC_1H GSE42262.BRD4.P493-6_MYC_1H 198 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 391 bp overlap
CBX5 1 dataset
ChIP GM12878 ENCFF542UDC 206 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 120 bp overlap
CHD1 1 dataset
ChIP GM12878 ENCFF566UBH 308 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 569 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 602 bp overlap
CREM 3 datasets
ChIP GM12878 ENCFF391UGE 275 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 322 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 78 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 296 bp overlap
DPF2 3 datasets
ChIP GM12878 ENCFF681AJV 77 bp overlap
ChIP GM12878 ENCFF681AJV 378 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 272 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCFF813OXE 265 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 232 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EED 2 datasets
ChIP GM12878 ENCFF266FYW 251 bp overlap
ChIP GM12878 ENCFF266FYW 169 bp overlap
EGR1 1 dataset
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 111 bp overlap
ELF1 3 datasets
ChIP A-549 GSE122203.ELF1.A-549 111 bp overlap
ChIP GM12878 ENCFF692SMY 104 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 262 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 275 bp overlap
ChIP GM12878 GSE97661.ETV6.GM12878 190 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 118 bp overlap
ChIP GM12878 ENCFF264DJE 181 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 352 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
GATAD2B 2 datasets
ChIP GM12878 ENCFF781IAU 176 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 303 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 180 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 323 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 105 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 242 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 419 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 493 bp overlap
IRF4 2 datasets
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 167 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 235 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 350 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MAX 1 dataset
ChIP P493-6 GSE42262.MAX.P493-6 335 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 447 bp overlap
MEF2A 2 datasets
ChIP GM12878 ENCFF652BHX 255 bp overlap
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 234 bp overlap
MEF2B 2 datasets
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 467 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 588 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 451 bp overlap
MTA3 3 datasets
ChIP GM12878 ENCFF681QPL 388 bp overlap
ChIP GM12878 ENCFF681QPL 545 bp overlap
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 511 bp overlap
MYC 5 datasets
ChIP P493-6 GSE77061.MYC.P493-6 80 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 282 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 118 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 119 bp overlap
NBN 1 dataset
ChIP GM12878 ENCFF213ZNN 434 bp overlap
NFIC 3 datasets
ChIP GM12878 ENCFF259FWL 275 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 235 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 168 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 209 bp overlap
NKRF 1 dataset
ChIP GM12878 ENCFF392NLB 431 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 366 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 133 bp overlap
PML 4 datasets
ChIP GM12878 ENCFF160JQZ 58 bp overlap
ChIP GM12878 ENCFF160JQZ 74 bp overlap
ChIP GM12878 ENCSR000BQM.PML.GM12878 158 bp overlap
ChIP GM12878 ENCSR000BQM.PML.GM12878 191 bp overlap
POLR2A 17 datasets
ChIP GM12878 ENCFF263VRI 233 bp overlap
ChIP GM12878 ENCFF412KAE 602 bp overlap
ChIP GM12878 ENCFF521FXC 473 bp overlap
ChIP GM12878 ENCFF631ERR 90 bp overlap
ChIP GM12878 ENCFF899QYP 104 bp overlap
ChIP GM12891 ENCFF012SUT 56 bp overlap
ChIP GM12891 ENCFF012SUT 127 bp overlap
ChIP GM12891 ENCFF012SUT 565 bp overlap
ChIP GM12891 ENCFF127ICP 240 bp overlap
ChIP GM12891 ENCFF379FCI 164 bp overlap
ChIP GM12892 ENCFF245LYF 275 bp overlap
ChIP GM12892 ENCFF506PGQ 262 bp overlap
ChIP GM18505 ENCFF311CYB 293 bp overlap
ChIP GM18505 ENCFF311CYB 509 bp overlap
ChIP GM18526 ENCFF599EPS 348 bp overlap
ChIP Raji ENCFF613VGX 282 bp overlap
ChIP Raji ENCFF613VGX 279 bp overlap
POU2F2 1 dataset
ChIP GM12878 ENCFF207RKY 321 bp overlap
PRDM10 2 datasets
ChIP K-562 ENCSR120MPG.PRDM10.K-562 465 bp overlap
ChIP K562 ENCFF740YLK 267 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 5 datasets
ChIP GM12878 ENCFF101UQZ 84 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 94 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 117 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 66 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 602 bp overlap
RBPJ 3 datasets
ChIP MUTUL GSE75503.RBPJ.MUTUL 161 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 84 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 174 bp overlap
RELA 2 datasets
ChIP GM12878 ENCSR000EAG.RELA.GM12878 153 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 175 bp overlap
RELB 1 dataset
ChIP GM12878 ENCFF217ADF 454 bp overlap
REST 2 datasets
ChIP GM12878 ENCSR000BQS.REST.GM12878 143 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 136 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 70 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 302 bp overlap
SIN3A 2 datasets
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 355 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD1 1 dataset
ChIP GM12878 ENCSR813DCK.SMAD1.GM12878 533 bp overlap
SMAD5 3 datasets
ChIP GM12878 ENCFF178LKN 214 bp overlap
ChIP GM12878 ENCFF178LKN 123 bp overlap
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 602 bp overlap
SND1 2 datasets
ChIP NHEK GSE29498.SND1.NHEK 147 bp overlap
ChIP NHEK GSE29498.SND1.NHEK 116 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 215 bp overlap
STAT3 2 datasets
ChIP OCI-Ly3 GSE50723.STAT3.OCI-Ly3 142 bp overlap
ChIP OCI-Ly7 GSE50723.STAT3.OCI-Ly7 410 bp overlap
STAT5A 3 datasets
ChIP GM12878 ENCFF267JUM 114 bp overlap
ChIP GM12878 ENCFF267JUM 314 bp overlap
ChIP GM12878 ENCSR000BQZ.STAT5A.GM12878 146 bp overlap
TAF1 5 datasets
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 390 bp overlap
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 64 bp overlap
ChIP GM12891 ENCFF254YPA 213 bp overlap
ChIP GM12891 ENCFF254YPA 337 bp overlap
ChIP GM12892 ENCFF440DJD 301 bp overlap
TBP 1 dataset
ChIP GM12878 ENCFF571OXR 342 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 602 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 370 bp overlap
TCF7 2 datasets
ChIP GM12878 ENCFF749DPM 114 bp overlap
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 60 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 161 bp overlap
TRIM22 2 datasets
ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 292 bp overlap
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 397 bp overlap
YY1 4 datasets
ChIP GM12878 ENCFF908JTL 131 bp overlap
ChIP GM12878 ENCFF908JTL 345 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 239 bp overlap
ChIP GM12892 ENCSR000BLT.YY1.GM12892 151 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 602 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 148 bp overlap
ZFP91 2 datasets
ChIP K-562 ENCSR898XMH.ZFP91.K-562 232 bp overlap
ChIP K562 ENCFF501CDP 54 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF320 2 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ChIP HEK293 GSE76494.ZNF320.HEK293 186 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCFF233SGE 76 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap