chr3 : 38,580,074 38,580,574
500 bp 109 TFs 4 linked genes
This 500 bp open chromatin element is linked to 4 target genes and is bound by 109 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SCN5A 69.3 kb Distal Multiome
EXOG 84.0 kb Distal Multiome
ACVR2B 126.5 kb Distal Multiome
XYLB 233.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:38,575,074 – 38,585,574
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 96 bp overlap
BRD4 7 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 204 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 196 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 147 bp overlap
ChIP MV4-11_IBET_SGC GSE71776.BRD4.MV4-11_IBET_SGC 257 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 240 bp overlap
ChIP SEM GSE83671.BRD4.SEM 259 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 162 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 146 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 305 bp overlap
CEBPB 2 datasets
ChIP MV4-11 GSE88746.CEBPB.MV4-11 235 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 114 bp overlap
CTCF 4 datasets
ChIP MM1-S GSE43743.CTCF.MM1-S 259 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 144 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 301 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 224 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF031ISE 170 bp overlap
ChIP BLaER1 ENCFF274GAT 96 bp overlap
ChIP BLaER1 ENCFF335XTP 480 bp overlap
ChIP BLaER1 ENCFF364PUR 160 bp overlap
ChIP BLaER1 ENCFF460KDD 121 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 55 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 319 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF813OXE 98 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 223 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 244 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 185 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 291 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 68 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 328 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 500 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 367 bp overlap
ChIP T98G GSE112240.EZH2.T98G 126 bp overlap
FLI1 1 dataset
ChIP SEM GSE117864.FLI1.SEM 229 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 184 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 189 bp overlap
GATA2 1 dataset
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 191 bp overlap
GATA4 12 datasets
ChIP DE DE-GATA4-1 374 bp overlap
ChIP DE DE-GATA4-2 449 bp overlap
ChIP G296S GSE85628.GATA4.G296S 283 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 283 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 331 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 198 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 207 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 332 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 300 bp overlap
ChIP foregut GSE117136.GATA4.foregut 296 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 343 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 322 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 147 bp overlap
ChIP DE DE-GATA6-1 309 bp overlap
ChIP DE DE-GATA6-2 395 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 488 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 416 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 441 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 472 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 500 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 487 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 394 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 385 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 380 bp overlap
GATAD2B 2 datasets
ChIP GM12878 ENCFF781IAU 95 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 135 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 295 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 192 bp overlap
ChIP GM12878 ENCFF824TGK 192 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 166 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 112 bp overlap
ChIP GM12878 ENCFF918AID 98 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 119 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 175 bp overlap
IRF4 3 datasets
ChIP GM12878 ENCFF769ZDL 194 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 152 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 104 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 231 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 116 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 415 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 193 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 176 bp overlap
KLF10 2 datasets
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
KLF12 2 datasets
Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap
Motif DE_48h DE_48h-KLF12_MA0742.2 9 bp overlap
KLF14 2 datasets
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
KLF5 1 dataset
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 131 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 470 bp overlap
LARP7 1 dataset
ChIP GM12878 ENCFF513CEX 64 bp overlap
MAX 3 datasets
ChIP P493-6 GSE36354.MAX.P493-6 157 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 142 bp overlap
ChIP P493-6_4HR GSE125863.MAX.P493-6_4HR 148 bp overlap
MAZ 2 datasets
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 131 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 354 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 269 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 138 bp overlap
MYB 3 datasets
ChIP SEM GSE117864.MYB.SEM 221 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 300 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 321 bp overlap
MYC 3 datasets
ChIP P493-6 GSE77061.MYC.P493-6 187 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 74 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 109 bp overlap
MYOD1 7 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 297 bp overlap
ChIP RD GSE137168.MYOD1.RD 212 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 229 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 206 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 168 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 234 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 197 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 167 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 199 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 212 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 483 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 219 bp overlap
NR2C2 2 datasets
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 261 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 168 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 126 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF791UHF 89 bp overlap
PATZ1 1 dataset
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 60 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 344 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 500 bp overlap
PPARA 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 178 bp overlap
PRDM9 2 datasets
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
RAD21 8 datasets
ChIP RH4 GSE83726.RAD21.RH4 221 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 59 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 76 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 158 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 145 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 138 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 159 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.RAD21.THP-1_siCtrl-NS1-Pam3csk-4h 170 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 170 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 99 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 210 bp overlap
RELA 9 datasets
ChIP GM12878 ENCSR664POU.RELA.GM12878 51 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 134 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 124 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 72 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 66 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 75 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 103 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.RELA.THP-1_eGFP-Pam3csk-4h 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 67 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 376 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 121 bp overlap
RNF2 1 dataset
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 191 bp overlap
RUNX1 3 datasets
ChIP MV4-11 GSE79899.RUNX1.MV4-11 122 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 199 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 192 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 146 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 196 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 167 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 305 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 316 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 360 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 403 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 330 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 190 bp overlap
SP1 3 datasets
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 78 bp overlap
SP2 2 datasets
Motif DE_36h DE_36h-SP2_MA0516.3 9 bp overlap
Motif DE_48h DE_48h-SP2_MA0516.3 9 bp overlap
SP4 2 datasets
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SPI1 14 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 208 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 117 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 146 bp overlap
ChIP GM12878 ENCFF134LCP 149 bp overlap
ChIP GM12891 ENCFF563IUT 150 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 165 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 165 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 170 bp overlap
ChIP RS4-11 GSE71616.SPI1.RS4-11 129 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 203 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 120 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 129 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 109 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 131 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 71 bp overlap
STAT5A 1 dataset
ChIP MV4-11 GSE64862.STAT5A.MV4-11 111 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 300 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 144 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 186 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 186 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 455 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 239 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 338 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 273 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCFF506WWB 205 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 182 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 174 bp overlap
TCF3 2 datasets
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 109 bp overlap
ChIP SEM GSE85988.TCF3.SEM 383 bp overlap
TCF4 3 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 227 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 222 bp overlap
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 198 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 379 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 126 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 250 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 250 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 282 bp overlap
ZNF148 2 datasets
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
ZNF281 2 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
ZNF692 2 datasets
Motif DE_36h DE_36h-ZNF692_MA1986.2 8 bp overlap
Motif DE_48h DE_48h-ZNF692_MA1986.2 8 bp overlap
ZNF701 1 dataset
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Zfp335 2 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap