chr3 : 16,533,928 – 16,534,261
333 bp 102 TFs 1 linked gene
This 333 bp open chromatin element is linked to LINC00690 and is bound by 102 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00690 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:16,528,928 – 16,539,261
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 333 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 305 bp overlap
ATF3 3 datasets
ChIP liver ENCFF375GID 262 bp overlap
ChIP liver ENCFF375GID 63 bp overlap
ChIP liver ENCFF867MFZ 103 bp overlap
BCL11B 2 datasets
ChIP HEK293 ENCFF859UHP 238 bp overlap
ChIP HEK293 ENCSR770PQN.BCL11B.HEK293 165 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 277 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 178 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 181 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 196 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 205 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 258 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 201 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 158 bp overlap
CEBPB 3 datasets
ChIP H1 ENCFF871PTR 194 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 260 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 115 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 111 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 146 bp overlap
ChIP BLaER1 ENCFF844FIP 257 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 333 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCFF528YED 158 bp overlap
FOXA1 4 datasets
ChIP liver ENCFF537QZV 306 bp overlap
ChIP liver ENCFF537QZV 107 bp overlap
ChIP liver ENCFF749ERP 225 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 333 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-2 289 bp overlap
ChIP liver ENCFF877SFI 237 bp overlap
ChIP liver ENCFF888VJF 245 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 321 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 297 bp overlap
GATA2 1 dataset
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 171 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 190 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 87 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 333 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 327 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 333 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 219 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 310 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 330 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 81 bp overlap
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 251 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 333 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 254 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCFF252CFL 331 bp overlap
HNF4A 4 datasets
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 167 bp overlap
ChIP liver ENCFF354NRH 213 bp overlap
ChIP liver ENCFF449HPV 247 bp overlap
ChIP liver ERP002306.HNF4A.liver 125 bp overlap
HNF4G 3 datasets
ChIP liver ENCFF170YNZ 253 bp overlap
ChIP liver ENCFF170YNZ 54 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 172 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 297 bp overlap
IKZF3 3 datasets
ChIP HEK293 ENCFF518OXG 317 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 295 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 189 bp overlap
INSM2 2 datasets
ChIP HEK293 ENCFF008ZWC 215 bp overlap
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 149 bp overlap
JUND 1 dataset
ChIP liver ENCFF007WWT 165 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 175 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 248 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 172 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 256 bp overlap
MAX 4 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 333 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 333 bp overlap
ChIP liver ENCFF584QGB 222 bp overlap
ChIP liver ENCSR521IID.MAX.liver 191 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 161 bp overlap
MED1 9 datasets
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 311 bp overlap
ChIP SGBS GSE64233.MED1.SGBS 333 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 214 bp overlap
ChIP hMSC-TERT4_D1 GSE104537.MED1.hMSC-TERT4_D1 200 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 251 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 235 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 333 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 195 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 318 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 278 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 199 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 209 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 327 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 294 bp overlap
MYOG 1 dataset
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 256 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 273 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 312 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 252 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 217 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 143 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 319 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 333 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 298 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 308 bp overlap
NR2F2 4 datasets
ChIP liver ENCFF427MRU 85 bp overlap
ChIP liver ENCFF565JGD 246 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 333 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 198 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 293 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 333 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 166 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 292 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 125 bp overlap
POLR2A 1 dataset
ChIP gastroesophageal sphincter ENCFF070PCA 260 bp overlap
PPARG 2 datasets
ChIP ASC GSE21366.PPARG.ASC 278 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 205 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 333 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 330 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 272 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 300 bp overlap
ChIP liver ENCFF522JHE 228 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 212 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 224 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 249 bp overlap
RELA 2 datasets
ChIP SGBS GSE64233.RELA.SGBS 267 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 294 bp overlap
REST 2 datasets
ChIP liver ENCFF240FWT 226 bp overlap
ChIP liver ENCSR893QWP.REST.liver 152 bp overlap
RXRA 3 datasets
ChIP liver ENCFF077DAP 150 bp overlap
ChIP liver ENCFF077DAP 150 bp overlap
ChIP liver ENCFF807CIA 205 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 331 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 149 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 301 bp overlap
SIX4 3 datasets
ChIP MCF-7 ENCFF919BLX 162 bp overlap
ChIP MCF-7 ENCSR279IEM.SIX4.MCF-7 152 bp overlap
ChIP WTC11 ENCFF891HYW 244 bp overlap
SIX5 2 datasets
ChIP H1 ENCFF942SOJ 78 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 259 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 310 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 322 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 184 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 202 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 152 bp overlap
SMARCC1 2 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 244 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 249 bp overlap
SP1 4 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 181 bp overlap
ChIP liver ENCFF597LFJ 203 bp overlap
ChIP liver ENCFF769YSM 92 bp overlap
ChIP liver ENCFF769YSM 73 bp overlap
SP7 3 datasets
ChIP HEK293 ENCFF733RBE 315 bp overlap
ChIP HEK293 ENCFF733RBE 315 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 333 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 260 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 161 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 173 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 107 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 132 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 333 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 333 bp overlap
YY1 4 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 333 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 156 bp overlap
ChIP liver ENCFF400MBC 333 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 325 bp overlap
ZBTB33 3 datasets
ChIP liver ENCFF542CIC 77 bp overlap
ChIP liver ENCSR345YWJ.ZBTB33.liver 295 bp overlap
ChIP liver ENCSR516HUP.ZBTB33.liver 259 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 266 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 250 bp overlap
ZEB1 1 dataset
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 333 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 108 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 291 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 333 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 98 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 266 bp overlap
ZNF213 1 dataset
ChIP HEK293 ENCSR295GRB.ZNF213.HEK293 213 bp overlap
ZNF24 2 datasets
ChIP HEK293 ENCFF308WOW 191 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 275 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 242 bp overlap
ZNF34 1 dataset
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 247 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 333 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 260 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 166 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 314 bp overlap
ZNF398 3 datasets
ChIP HEK293 ENCFF184XEW 286 bp overlap
ChIP HEK293 ENCFF184XEW 103 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 333 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 333 bp overlap
ChIP HEK293 GSE76494.ZNF449.HEK293 131 bp overlap
ZNF501 3 datasets
ChIP HEK293 ENCFF066RAQ 313 bp overlap
ChIP HEK293 ENCFF066RAQ 314 bp overlap
ChIP HEK293 ENCSR461ZJT.ZNF501.HEK293 333 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCSR159GFL.ZNF518A.HEK293 224 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 132 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 161 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 265 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 320 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 313 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 333 bp overlap
ZNF652 1 dataset
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 129 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 233 bp overlap
ZNF843 3 datasets
ChIP HEK293 ENCFF241QRH 153 bp overlap
ChIP HEK293 ENCFF241QRH 75 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 321 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 240 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 257 bp overlap
ZXDB 3 datasets
ChIP HEK293 ENCFF835SGA 184 bp overlap
ChIP HEK293 ENCFF835SGA 131 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 333 bp overlap
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