chr2 : 85,430,848 85,431,147
299 bp 102 TFs 1 linked gene
This 299 bp open chromatin element is linked to SH2D6 and is bound by 102 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SH2D6 10.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:85,425,848 – 85,436,147
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 158 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 96 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 211 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 299 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 218 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 207 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 299 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 263 bp overlap
BRD3 1 dataset
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 299 bp overlap
BRD4 16 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 241 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 299 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 299 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 299 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 299 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 206 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 276 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 299 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 299 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 299 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 220 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 299 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 287 bp overlap
ChIP hESC GSE33281.BRD4.hESC 144 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 221 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 118 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 157 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 299 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 272 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 299 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 282 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 130 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 253 bp overlap
EP300 7 datasets
ChIP H1 ENCFF927IYK 283 bp overlap
ChIP H1 ENCFF937OPV 161 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 198 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 193 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 253 bp overlap
ChIP neural cell ENCFF442QNK 58 bp overlap
ChIP tibial nerve ENCFF346AYA 252 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 270 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 197 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 299 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 276 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 235 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
Hic1 2 datasets
Motif DE_24h DE_24h-Hic1_MA0739.2 8 bp overlap
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
JUN 6 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 94 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 142 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 168 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 206 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 230 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 112 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 197 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 63 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 236 bp overlap
KDM5B 4 datasets
ChIP MCF-7 GSE46055.KDM5B.MCF-7 148 bp overlap
ChIP SUM159 GSE46055.KDM5B.SUM159 299 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 125 bp overlap
KLF16 2 datasets
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF9 3 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 299 bp overlap
KMT2A 1 dataset
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 275 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 116 bp overlap
MAX 4 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 82 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 237 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 174 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 156 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 299 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 279 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MXI1 3 datasets
ChIP WA01 ENCSR000EBR.MXI1.WA01 152 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 235 bp overlap
ChIP neural cell ENCFF623HQN 299 bp overlap
MYB 1 dataset
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 151 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 204 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 226 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 257 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 299 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 116 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 192 bp overlap
NFIC 1 dataset
Motif DE_24h DE_24h-NFIC_MA1527.2 15 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 205 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 251 bp overlap
NFKB2 2 datasets
Motif DE_24h DE_24h-NFKB2_MA0778.2 11 bp overlap
Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap
NFYA 1 dataset
Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 249 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 261 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 250 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 65 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 208 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 156 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 122 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 244 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 196 bp overlap
ChIP neural cell ENCFF564MOT 50 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 210 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 207 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 228 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 181 bp overlap
RELA 4 datasets
ChIP 786-O GSE86092.RELA.786-O 166 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 233 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 236 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap
REST 2 datasets
Motif DE_24h DE_24h-REST_MA0138.3 20 bp overlap
ChIP neural ENCSR000BTV.REST.neural 299 bp overlap
RFX1 9 datasets
Motif DE_24h DE_24h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 299 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 299 bp overlap
ChIP K562 ENCFF421AVO 299 bp overlap
ChIP K562 ENCFF809XVG 299 bp overlap
ChIP MCF-7 ENCFF782EZS 299 bp overlap
ChIP MCF-7 ENCFF973QAD 299 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 299 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 299 bp overlap
RFX2 1 dataset
Motif DE_24h DE_24h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_24h DE_24h-RFX3_MA0798.3 16 bp overlap
RFX5 4 datasets
Motif DE_24h DE_24h-RFX5_MA0510.3 14 bp overlap
ChIP H1 ENCFF605EGG 299 bp overlap
ChIP H1 ENCFF605EGG 106 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 157 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 232 bp overlap
Rfx6 1 dataset
Motif DE_24h DE_24h-Rfx6_MA1724.2 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 147 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 235 bp overlap
ChIP H1 ENCFF896IJG 293 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 233 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 203 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 225 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 205 bp overlap
SMARCA4 7 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 280 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 149 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 299 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 269 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 299 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 228 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 259 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 284 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 51 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 299 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 299 bp overlap
ChIP neural cell ENCFF795YGY 79 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 263 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 158 bp overlap
SP1 4 datasets
ChIP H1 ENCFF263FUH 299 bp overlap
ChIP HEK293 GSE76494.SP1.HEK293 213 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 271 bp overlap
ChIP WTC11 ENCFF688PEU 210 bp overlap
SP2 4 datasets
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
ChIP HEK293 ENCFF181QXT 150 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 259 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 174 bp overlap
SP8 2 datasets
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SP9 2 datasets
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 192 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 124 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 181 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 299 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 262 bp overlap
ChIP H1 ENCFF778PAX 226 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 254 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 200 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 200 bp overlap
Tfcp2l1 2 datasets
Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap
Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap
Wt1 2 datasets
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 234 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 299 bp overlap
ZKSCAN3 2 datasets
Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap
Motif ES_0h ES_0h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF213 2 datasets
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF281 2 datasets
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF398 3 datasets
ChIP H9 GSE133630.ZNF398.H9 108 bp overlap
ChIP HEK293 ENCFF184XEW 219 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 246 bp overlap
ZNF701 2 datasets
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF740 2 datasets
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
Motif ES_0h ES_0h-ZNF740_MA0753.3 10 bp overlap
ZNF93 2 datasets
Motif DE_24h DE_24h-ZNF93_MA1721.2 14 bp overlap
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap
ZSCAN16 2 datasets
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap
Motif ES_0h ES_0h-ZSCAN16_MA2100.1 18 bp overlap