chr15 : 29,345,363 29,346,382
1,019 bp 124 TFs 2 linked genes
This 1.0 kb open chromatin element is linked to NSMCE3 and ENTREP2 and is bound by 124 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NSMCE3 76.0 kb Distal Multiome
ENTREP2 225.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:29,340,363 – 29,351,382
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
124 transcription factors
Source
Cell type
AR 17 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 215 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 96 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 168 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 112 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 142 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 158 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 148 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 210 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 218 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 240 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 134 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 407 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 138 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 160 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 92 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 159 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 106 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 729 bp overlap
ChIP H1 ENCFF399KAM 529 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 941 bp overlap
ATF2 3 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif DE_24h DE_24h-ATF2_MA1632.2 10 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 177 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 242 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 783 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 239 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 434 bp overlap
BRD4 1 dataset
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 186 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 134 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 136 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif DE_24h DE_24h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 142 bp overlap
ELK1::SREBF2 2 datasets
Motif DE_12h DE_12h-ELK1SREBF2_MA1933.2 15 bp overlap
Motif DE_24h DE_24h-ELK1SREBF2_MA1933.2 15 bp overlap
EOMES 1 dataset
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 153 bp overlap
ERF::SREBF2 2 datasets
Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap
Motif DE_24h DE_24h-ERFSREBF2_MA1939.2 16 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 173 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 219 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif DE_24h DE_24h-Ebf4_MA2122.1 11 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOS::JUN 2 datasets
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_24h DE_24h-FOSJUN_MA1126.2 10 bp overlap
FOXA1 1 dataset
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 91 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 326 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 380 bp overlap
ChIP DE DE-GATA6-2 378 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 669 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 699 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 774 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 530 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 732 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 774 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 510 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 437 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 308 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 753 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 152 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 200 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 166 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 211 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 353 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 864 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 359 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 365 bp overlap
JUND 2 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 505 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MZF1 2 datasets
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
Motif DE_24h DE_24h-MZF1_MA0056.3 8 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 1000 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 145 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NR3C1 3 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 138 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 180 bp overlap
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 193 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 93 bp overlap
PGR 3 datasets
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 434 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 215 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 215 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP thyroid gland ENCFF979LRR 338 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU5F1 5 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 960 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 856 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 214 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 790 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 582 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 565 bp overlap
RBPJ 2 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 191 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 298 bp overlap
RORC 2 datasets
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
Motif DE_24h DE_24h-RORC_MA1151.2 10 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 315 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 213 bp overlap
ChIP hiPSC_IA12 GSE106870.SIN3A.hiPSC_IA12 162 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 305 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 546 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1006 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 995 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 813 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 839 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 960 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 816 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 488 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 266 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 466 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 407 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 410 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 257 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 171 bp overlap
SREBF1 4 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
Motif DE_24h DE_24h-SREBF1_MA0595.1 10 bp overlap
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 208 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 132 bp overlap
ChIP hESC GSE122298.TBP.hESC 154 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 3 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 250 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 398 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 279 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 249 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP H1 ENCFF524BTL 337 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 342 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 179 bp overlap
ZNF16 1 dataset
Motif DE_24h DE_24h-ZNF16_MA1654.2 21 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 708 bp overlap
ZNF605 1 dataset
ChIP HEK293T GSE78099.ZNF605.HEK293T 257 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF768 1 dataset
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
ZNF770 1 dataset
Motif DE_24h DE_24h-ZNF770_MA2099.1 8 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap