chr1 : 229,434,725 – 229,435,140
415 bp 112 TFs 1 linked gene
This 415 bp open chromatin element is linked to ACTA1 and is bound by 112 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ACTA1 621 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:229,429,725 – 229,440,140
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP K-562 ENCSR641BSL.AGO1.K-562 85 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 124 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 137 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 279 bp overlap
ASCL1 2 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 155 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 55 bp overlap
ChIP H1 ENCFF399KAM 261 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 379 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 183 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 297 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 353 bp overlap
BRD4 14 datasets
ChIP BE2C GSE80151.BRD4.BE2C 265 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 218 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 373 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 346 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 371 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 415 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 124 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 322 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 290 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 265 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 305 bp overlap
ChIP hESC GSE33281.BRD4.hESC 78 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 108 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 244 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 280 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 310 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 415 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 219 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 232 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 327 bp overlap
CTCF 3 datasets
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 143 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 178 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
DEAF1 1 dataset
ChIP keratinocyte GSE129965.DEAF1.keratinocyte 112 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 139 bp overlap
EHMT2 1 dataset
ChIP Rh41 GSE118666.EHMT2.Rh41 229 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 186 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 173 bp overlap
ESR1 2 datasets
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 381 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 143 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 226 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 351 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 380 bp overlap
EZH2 11 datasets
ChIP GM23248 ENCFF404ZHM 323 bp overlap
ChIP GM23338 ENCFF613YON 50 bp overlap
ChIP GM23338 ENCFF613YON 251 bp overlap
ChIP H1 ENCFF232NZA 305 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 188 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 354 bp overlap
ChIP astrocyte ENCFF365JTP 241 bp overlap
ChIP hepatocyte ENCFF552DZB 243 bp overlap
ChIP keratinocyte ENCFF070STK 68 bp overlap
ChIP keratinocyte ENCFF070STK 267 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 290 bp overlap
EZH2_phosphoT487 3 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 125 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 232 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 145 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 131 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 241 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 163 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 172 bp overlap
GMEB1 1 dataset
ChIP K-562 ENCSR928KOR.GMEB1.K-562 164 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 164 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 389 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 341 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 224 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 241 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 125 bp overlap
HNRNPK 3 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 199 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 121 bp overlap
ChIP K-562 GSE120104.HNRNPK.K-562 118 bp overlap
HNRNPLL 5 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 342 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 342 bp overlap
ChIP HepG2 ENCFF355PIC 189 bp overlap
ChIP HepG2 ENCFF952XAB 189 bp overlap
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 55 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 109 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 235 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 299 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 242 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 149 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 231 bp overlap
KDM3A 1 dataset
ChIP 22Rv1_shKDM3A GSE109748.KDM3A.22Rv1_shKDM3A 74 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 269 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 125 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 170 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 168 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 285 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 247 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 204 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 365 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 224 bp overlap
MYCN 8 datasets
ChIP BE2C GSE80151.MYCN.BE2C 235 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 388 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 181 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 225 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 166 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 392 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 193 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 235 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 291 bp overlap
MYOD1 6 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 353 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 238 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 220 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 247 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 170 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 199 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 242 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 226 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 273 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 227 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 415 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 196 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 209 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 235 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 219 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 202 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 174 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 242 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 271 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 271 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 318 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 130 bp overlap
PCBP1 1 dataset
ChIP K-562 GSE120104.PCBP1.K-562 198 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 130 bp overlap
POLR2A 2 datasets
ChIP gastrocnemius medialis ENCFF081DTE 300 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 333 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF648YPL 67 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 218 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 221 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 219 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 264 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 199 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 274 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 231 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 232 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 392 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 118 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 185 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 181 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 311 bp overlap
REST 9 datasets
ChIP GM23338 ENCFF024TCL 244 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 118 bp overlap
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 89 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 233 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 135 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 334 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 146 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 207 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 57 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 415 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 268 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 111 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 206 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 276 bp overlap
ChIP brain-prefrontal-cortex_ad1 GSE106870.SIN3A.brain-prefrontal-cortex_ad1 278 bp overlap
ChIP hiPSC_IA12 GSE106870.SIN3A.hiPSC_IA12 162 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 163 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 162 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 226 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 145 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 249 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 164 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 267 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 238 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 186 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 325 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 288 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 256 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 316 bp overlap
SMC1 1 dataset
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 134 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 136 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 152 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 166 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 289 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 303 bp overlap
SRSF3 1 dataset
ChIP Hep-G2 GSE120104.SRSF3.Hep-G2 119 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 262 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 226 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF881NFR 276 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 97 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 213 bp overlap
ChIP NT2/D1 ENCFF574SXS 146 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 178 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 170 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 175 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 136 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 118 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 258 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 163 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 170 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 262 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 262 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 303 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 381 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 99 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 108 bp overlap
ZFX 1 dataset
ChIP HEK293T ENCFF402JZW 202 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 134 bp overlap
ZNF398 1 dataset
ChIP H9 GSE133630.ZNF398.H9 173 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 287 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 415 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 204 bp overlap
ZNF561 1 dataset
ChIP HEK293T GSE78099.ZNF561.HEK293T 153 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 70 bp overlap
ChIP HepG2 ENCFF653WIX 280 bp overlap
ZNF800 2 datasets
ChIP HepG2 ENCFF840FYM 282 bp overlap
ChIP HepG2 ENCFF840FYM 415 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 238 bp overlap
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