chr12 : 65,897,482 65,897,992
510 bp 129 TFs 4 linked genes
This 510 bp open chromatin element is linked to 4 target genes and is bound by 129 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
HMGA2-AS1 15.7 kb Distal Multiome
HMGA2 73.2 kb Distal Multiome
LLPH 233.0 kb Distal Multiome
TMBIM4 271.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:65,892,482 – 65,902,992
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
129 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 190 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 365 bp overlap
ATF2 2 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 175 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BCL11A 2 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 255 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 184 bp overlap
BRD4 1 dataset
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 216 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 177 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 138 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 214 bp overlap
CREB1 2 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 305 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 404 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DPF2 3 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 189 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 510 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 203 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 408 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOSL2 2 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 50 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 424 bp overlap
GLIS2 1 dataset
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
GLIS3 2 datasets
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 338 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 345 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 448 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HEXIM1 1 dataset
ChIP A-375_DMSO GSE68052.HEXIM1.A-375_DMSO 128 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 510 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 458 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 326 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 301 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 446 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 306 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 270 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KMT2C 2 datasets
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 510 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 237 bp overlap
KMT2D 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 395 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 278 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 303 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 285 bp overlap
ChIP SK-N-SH ENCFF285LXR 395 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 208 bp overlap
ChIP WTC11 ENCFF223QFY 491 bp overlap
MED1 5 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 172 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 212 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 328 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 219 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 212 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 104 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 302 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 203 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 323 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 202 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 323 bp overlap
ChIP hESC GSE20650.NANOG.hESC 267 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 248 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
NR3C1 5 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 233 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 153 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 186 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 148 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 192 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 248 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 135 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 209 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 140 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POLR2A 3 datasets
ChIP HCT116 ENCFF508RDJ 373 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 406 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 181 bp overlap
POU5F1 10 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 149 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 349 bp overlap
ChIP GM23338 ENCFF333SNB 268 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 381 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 367 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 192 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 154 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 250 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 210 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 176 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 300 bp overlap
PRDM9 3 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 284 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 314 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 151 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 241 bp overlap
SMARCA4 8 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 239 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 268 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 120 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 203 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 202 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 186 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 258 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 305 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 259 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 243 bp overlap
SMARCC1 10 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 263 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 457 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 201 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 220 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 54 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 263 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 189 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 225 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 247 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 241 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 251 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 252 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 213 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 301 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 278 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 351 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 111 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 140 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 163 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD1 4 datasets
ChIP CCLP1 GSE62272.TEAD1.CCLP1 176 bp overlap
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 397 bp overlap
ChIP WTC11 ENCFF502QUV 313 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 5 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 320 bp overlap
ChIP H1 ENCFF778PAX 203 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 127 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 296 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 147 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 245 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 134 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 426 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 400 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ChIP WTC11 ENCFF551GAV 366 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF682 2 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 510 bp overlap
ZNF75A 3 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap