chr9 : 137,220,666 – 137,221,008
342 bp 99 TFs 4 linked genes
This 342 bp open chromatin element is linked to 4 target genes and is bound by 99 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RNF208 1.2 kb Proximal Proximity
ENSG00000284976 3.2 kb Proximal Proximity
CYSRT1 4.2 kb Proximal Proximity
RNF224 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:137,215,666 – 137,226,008
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 342 bp overlap
AGO1 6 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 342 bp overlap
ChIP HepG2 ENCFF277EOU 342 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 342 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 342 bp overlap
ChIP K562 ENCFF025NLP 333 bp overlap
ChIP K562 ENCFF741BCI 333 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 127 bp overlap
ChIP HepG2 ENCFF773YDL 127 bp overlap
AR 4 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 197 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 138 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 209 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 237 bp overlap
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 50 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 153 bp overlap
ARID4B 1 dataset
ChIP PC-3 GSE116669.ARID4B.PC-3 342 bp overlap
ATF2 6 datasets
ChIP HEK293 ENCFF194VKZ 342 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 207 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 282 bp overlap
ChIP HepG2 ENCFF955VER 129 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 288 bp overlap
ChIP K562 ENCFF139ZZG 315 bp overlap
ATF7 2 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 307 bp overlap
ChIP HepG2 ENCFF470FKK 324 bp overlap
BCL11A 2 datasets
ChIP HEK293 ENCFF294OHB 279 bp overlap
ChIP HEK293 ENCSR021DJC.BCL11A.HEK293 263 bp overlap
BCL11B 1 dataset
ChIP HEK293 ENCSR770PQN.BCL11B.HEK293 342 bp overlap
BRD4 12 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 342 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 284 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 143 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 51 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 289 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 342 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 203 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 263 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 201 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 304 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 56 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 342 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 253 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 236 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 140 bp overlap
CTCF 4 datasets
ChIP HCT-116 GSE131606.CTCF.HCT-116 116 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 199 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 70 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 53 bp overlap
DNMT3B 1 dataset
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 235 bp overlap
ESR1 3 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 302 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 245 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 180 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 118 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 302 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR000BLO.GABPA.K-562 133 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 181 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 342 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 244 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 240 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 342 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 335 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 342 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 335 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 332 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 117 bp overlap
HNRNPL 5 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 284 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 239 bp overlap
ChIP HepG2 ENCFF671UYF 342 bp overlap
ChIP HepG2 ENCFF671UYF 272 bp overlap
ChIP HepG2 ENCFF684GAM 342 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 91 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 186 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 266 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 208 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 289 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 342 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 200 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 284 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 317 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 342 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 255 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 197 bp overlap
JUND 2 datasets
ChIP HepG2 ENCFF869OPW 271 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KDM1A 1 dataset
ChIP SKNO-1_DMSO GSE71739.KDM1A.SKNO-1_DMSO 93 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 280 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 337 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 258 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 290 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 263 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 189 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 80 bp overlap
MCRS1 2 datasets
ChIP Hep-G2 GSE107730.MCRS1.Hep-G2 323 bp overlap
ChIP Hep-G2 GSE97411.MCRS1.Hep-G2 323 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 342 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 342 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 191 bp overlap
MNX1 1 dataset
ChIP HepG2 ENCFF938KYA 131 bp overlap
MTA1 1 dataset
ChIP HepG2 ENCFF038CCB 311 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 204 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 88 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 193 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 266 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 89 bp overlap
NOTCH1 1 dataset
ChIP HCC1599 GSE116871.NOTCH1.HCC1599 214 bp overlap
NR5A2 2 datasets
ChIP A549 ENCFF834RVE 319 bp overlap
ChIP A549 ENCFF834RVE 279 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 291 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 122 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 83 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 277 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 342 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 72 bp overlap
ChIP HepG2 ENCFF604TPT 295 bp overlap
ChIP K562 ENCFF121LOV 72 bp overlap
ChIP K562 ENCFF121LOV 273 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 130 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 342 bp overlap
ChIP K562 ENCFF648YPL 342 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 333 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 342 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
PRPF4 5 datasets
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 286 bp overlap
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 73 bp overlap
ChIP HepG2 ENCFF431ZRN 105 bp overlap
ChIP HepG2 ENCFF645WCL 57 bp overlap
ChIP K562 ENCFF202AJJ 244 bp overlap
RBFOX2 4 datasets
ChIP HepG2 ENCFF554DMZ 342 bp overlap
ChIP HepG2 ENCFF939HTZ 342 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 342 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 342 bp overlap
RBM22 4 datasets
ChIP K-562 GSE120104.RBM22.K-562 342 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 272 bp overlap
ChIP K562 ENCFF420JDS 123 bp overlap
ChIP K562 ENCFF629OUL 197 bp overlap
RBPJ 1 dataset
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 175 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 234 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 342 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 342 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 198 bp overlap
RXRA 2 datasets
ChIP HepG2 ENCFF763IEA 246 bp overlap
ChIP HepG2 ENCFF763IEA 342 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 223 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 183 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 84 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 342 bp overlap
SMARCB1 1 dataset
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 205 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 175 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 71 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 303 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 118 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 76 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 171 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 171 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 140 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 152 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 162 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 50 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 239 bp overlap
ZBTB10 1 dataset
ChIP HEK293 ENCSR004PLU.ZBTB10.HEK293 306 bp overlap
ZBTB33 6 datasets
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 280 bp overlap
ChIP HepG2 ENCFF778UKV 141 bp overlap
ChIP HepG2 ENCFF778UKV 234 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 342 bp overlap
ChIP K562 ENCFF427SDV 149 bp overlap
ChIP K562 ENCFF875HLX 342 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 190 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCFF809BPK 342 bp overlap
ChIP U2OS GSE96776.ZBTB48.U2OS 177 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 331 bp overlap
ZBTB7A 3 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 93 bp overlap
ChIP K562 ENCFF579ZGM 342 bp overlap
ChIP K562 ENCFF579ZGM 179 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 216 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 325 bp overlap
ZEB1 1 dataset
ChIP RKO GSE88734.ZEB1.RKO 276 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 337 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 245 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 159 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 66 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 287 bp overlap
ZNF202 2 datasets
ChIP HEK293 ENCFF574FZA 144 bp overlap
ChIP HEK293 ENCFF574FZA 288 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 226 bp overlap
ZNF274 1 dataset
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 87 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 113 bp overlap
ZNF423 1 dataset
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 318 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 114 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 272 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 342 bp overlap
ZNF703 1 dataset
ChIP HepG2 ENCFF597PHF 165 bp overlap
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