chr9 : 109,318,263 109,318,687
424 bp 110 TFs 3 linked genes
This 424 bp open chromatin element is linked to EPB41L4B, PTPN3, and TMEM245 and is bound by 110 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
EPB41L4B 2.4 kb Proximal Proximity
PTPN3 179.9 kb Distal Multiome
TMEM245 198.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:109,313,263 – 109,323,687
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 209 bp overlap
AR 4 datasets
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 173 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 98 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 241 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 111 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 227 bp overlap
ChIP H1 ENCFF399KAM 408 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 424 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 306 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 271 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 171 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 220 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 424 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 282 bp overlap
BRD4 1 dataset
ChIP COLO-205 GSE73319.BRD4.COLO-205 312 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 424 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 157 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 145 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 155 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 260 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 117 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 171 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 107 bp overlap
ChIP H1 ENCFF126NLU 350 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 186 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 338 bp overlap
CREB3L1 1 dataset
Motif DE_12h DE_12h-CREB3L1_MA0839.2 13 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 223 bp overlap
CTCF 6 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 218 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 157 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 100 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 212 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 217 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 171 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 228 bp overlap
ERG 1 dataset
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 141 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 319 bp overlap
EZH2 6 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 231 bp overlap
ChIP OCI-LY7 ENCFF434OYG 88 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 344 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 193 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 371 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 239 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 294 bp overlap
ChIP WTC11 ENCFF875IGU 321 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 145 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 107 bp overlap
ChIP SK-N-SH ENCFF764OZD 60 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 383 bp overlap
ChIP H1 ENCFF939VKA 174 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 96 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 158 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 305 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 323 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 233 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 190 bp overlap
JUN 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 148 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 241 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 331 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 353 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 349 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 120 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 387 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 424 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 86 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 131 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 226 bp overlap
MYCN 2 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 418 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 263 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 424 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 71 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 271 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 219 bp overlap
ChIP hESC GSE18292.NANOG.hESC 82 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 87 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 1 dataset
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 178 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 8 datasets
ChIP GM23338 ENCFF450WCS 384 bp overlap
ChIP H1 ENCFF566JSR 424 bp overlap
ChIP H1 ENCFF833NJP 103 bp overlap
ChIP body of pancreas ENCFF501FEC 424 bp overlap
ChIP body of pancreas ENCFF675RCN 424 bp overlap
ChIP body of pancreas ENCFF727UBE 402 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP thyroid gland ENCFF979LRR 424 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 203 bp overlap
POU5F1 10 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 221 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 424 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 391 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 188 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 155 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 342 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 424 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 222 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 175 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 267 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 424 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 237 bp overlap
REST 3 datasets
ChIP WA01 ENCSR000BHM.REST.WA01 164 bp overlap
ChIP neural ENCSR000BTV.REST.neural 329 bp overlap
ChIP neural cell ENCFF882LXX 390 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 299 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 291 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 67 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 312 bp overlap
SFPQ 1 dataset
ChIP LTAD_EtOH GSE94577.SFPQ.LTAD_EtOH 180 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 389 bp overlap
ChIP H1 ENCFF896IJG 213 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 424 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 194 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 246 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 304 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 265 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 203 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 237 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 50 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 267 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 246 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 231 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 424 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 303 bp overlap
SMARCC1 3 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 113 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 161 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 270 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 192 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 424 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 278 bp overlap
SOX2 3 datasets
ChIP TT GSE46837.SOX2.TT 157 bp overlap
ChIP hESC GSE18292.SOX2.hESC 85 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 294 bp overlap
SP1 4 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 205 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 197 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 88 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 224 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 98 bp overlap
STAT3 4 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 163 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 158 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 119 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 337 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 424 bp overlap
TBP 5 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 230 bp overlap
ChIP hESC GSE122298.TBP.hESC 291 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 424 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 327 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 424 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 168 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 281 bp overlap
TEAD4 3 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 229 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 248 bp overlap
ChIP H1 ENCFF778PAX 182 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 292 bp overlap
TP63 19 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 368 bp overlap
ChIP EP156T GSE43111.TP63.EP156T 173 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 235 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 296 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 180 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 238 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 278 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 422 bp overlap
ChIP TT GSE46837.TP63.TT 243 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 302 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 144 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 295 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 293 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 295 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 297 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 296 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 167 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 243 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 219 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 2 datasets
ChIP WTC11 ENCFF699QGS 65 bp overlap
ChIP WTC11 ENCFF699QGS 304 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 400 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 204 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ChIP HEK293T GSE78099.ZNF257.HEK293T 238 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ChIP HEK293 ENCFF336CWQ 230 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 148 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 132 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap