chr1:150,313,761–150,314,506

chr1 : 150,313,761 – 150,314,506

745 bp 108 TFs 14 linked genes

This 745 bp open chromatin element is linked to 14 target genes and is bound by 108 transcription factors.

Linked Genes

14 genes

Gene	Expression	Dist. to TSS	Distance	Link type
PRPF3		7.0 kb	Proximal	Proximity
MRPS21		20.2 kb	Distal	Multiome
CIART		31.5 kb	Distal	Multiome
C1orf54		41.3 kb	Distal	Multiome
APH1A		45.1 kb	Distal	Multiome
RPRD2		50.1 kb	Distal	Multiome
CA14		56.3 kb	Distal	Multiome
ENSG00000276110		56.8 kb	Distal	Multiome
ANP32E		78.0 kb	Distal	Multiome
PLEKHO1		163.5 kb	Distal	Multiome
TARS2		173.3 kb	Distal	Multiome
VPS45		246.3 kb	Distal	Multiome
ENSG00000285184		246.4 kb	Distal	Multiome
MCL1		265.5 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

108 transcription factors

ChIP K562 ENCFF492SKF 557 bp overlap

ChIP LNCaP GSE43720.AR.LNCaP 192 bp overlap

ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 174 bp overlap

ARID1B 2 datasets

ChIP K-562 ENCSR822CCM.ARID1B.K-562 278 bp overlap

ChIP K562 ENCFF938UXQ 541 bp overlap

ARID2 1 dataset

ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 283 bp overlap

ARNT 3 datasets

ChIP K-562 ENCSR613NUC.ARNT.K-562 258 bp overlap

ChIP K562 ENCFF451RAF 485 bp overlap

ChIP K562 ENCFF451RAF 485 bp overlap

ATOH7 1 dataset

Motif DE_72h DE_72h-ATOH7_MA1468.1 10 bp overlap

Ahr::Arnt 2 datasets

Motif DE_72h DE_72h-AhrArnt_MA0006.2 5 bp overlap

Motif DE_72h DE_72h-AhrArnt_MA0006.2 5 bp overlap

Arid3a 2 datasets

Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap

Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap

BACH2 1 dataset

Motif DE_72h DE_72h-BACH2_MA1101.3 11 bp overlap

BARHL1 1 dataset

Motif DE_72h DE_72h-BARHL1_MA0877.4 6 bp overlap

BARHL2 1 dataset

Motif DE_72h DE_72h-BARHL2_MA0635.2 6 bp overlap

ChIP K-562 ENCSR808AKZ.BCOR.K-562 234 bp overlap

ChIP HUVEC-C_MS417 GSE60171.BRD3.HUVEC-C_MS417 232 bp overlap

BRD4 2 datasets

ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap

ChIP T-47D ERP003925.BRD4.T-47D 239 bp overlap

CBFA2T2 1 dataset

ChIP K562 ENCFF963TXY 381 bp overlap

CBFA2T3 2 datasets

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 381 bp overlap

ChIP K562 ENCFF673OEZ 186 bp overlap

ChIP RH5 GSE155861.CHD4.RH5 462 bp overlap

CTCFL 1 dataset

ChIP FT282 GSE131931.CTCFL.FT282 154 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF093OYK 237 bp overlap

ChIP BLaER1 ENCFF262VBH 112 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

DPF2 2 datasets

ChIP K-562 ENCSR219BXP.DPF2.K-562 229 bp overlap

ChIP K562 ENCFF775HUO 577 bp overlap

Dmbx1 1 dataset

Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap

EHMT2 1 dataset

ChIP K-562 ENCSR175EOM.EHMT2.K-562 182 bp overlap

ChIP MCF-7 GSE35109.ESR1.MCF-7 101 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap

FOXA2 3 datasets

ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 227 bp overlap

ChIP DE DE-FOXA2-1 625 bp overlap

ChIP DE DE-FOXA2-2 741 bp overlap

GATA2 1 dataset

ChIP K-562 ENCSR000BKM.GATA2.K-562 181 bp overlap

GATA4 4 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 298 bp overlap

ChIP DE DE-GATA4-1 578 bp overlap

ChIP DE DE-GATA4-2 658 bp overlap

ChIP Hep-G2 GSE135714.GATA4.Hep-G2 251 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 577 bp overlap

ChIP DE DE-GATA6-2 598 bp overlap

GATAD2A 1 dataset

ChIP K562 ENCFF071LJW 345 bp overlap

Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap

GFI1B 1 dataset

ChIP K-562 ENCSR509GDT.GFI1B.K-562 335 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

Gfi1B 1 dataset

Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap

HDAC1 4 datasets

ChIP K-562 ENCSR711VWL.HDAC1.K-562 313 bp overlap

ChIP K-562 ENCSR387UWP.HDAC1.K-562 259 bp overlap

ChIP K562 ENCFF928TKZ 457 bp overlap

ChIP K562 ENCFF968WBH 521 bp overlap

HDAC2 3 datasets

ChIP K-562 ENCSR893WSB.HDAC2.K-562 324 bp overlap

ChIP K-562 ENCSR000BMG.HDAC2.K-562 271 bp overlap

ChIP K562 ENCFF744ALD 148 bp overlap

HMBOX1 1 dataset

ChIP K562 ENCFF055GAZ 528 bp overlap

Motif DE_72h DE_72h-HSF2_MA0770.1 13 bp overlap

Motif DE_72h DE_72h-HSF4_MA0771.1 13 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_72h DE_72h-Hand1Tcf3_MA0092.2 9 bp overlap

Motif DE_72h DE_72h-JDP2_MA0655.1 9 bp overlap

KDM1A 5 datasets

ChIP K-562 ENCSR360HRA.KDM1A.K-562 298 bp overlap

ChIP K-562 ENCSR908CMW.KDM1A.K-562 283 bp overlap

ChIP K-562 GSE117944.KDM1A.K-562 170 bp overlap

ChIP K562 ENCFF128TYE 121 bp overlap

ChIP K562 ENCFF133OLU 461 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_72h DE_72h-MAFGNFE2L1_MA0089.3 11 bp overlap

ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 148 bp overlap

ChIP K-562 ENCSR512NLO.MNT.K-562 295 bp overlap

Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap

MTA2 2 datasets

ChIP K-562 ENCSR411UYA.MTA2.K-562 221 bp overlap

ChIP RH4 GSE155861.MTA2.RH4 238 bp overlap

ChIP K-562 ENCSR180NCY.MTA3.K-562 256 bp overlap

Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap

ChIP K-562 ENCSR000EGS.MYC.K-562 125 bp overlap

NEUROD1 4 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 257 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 393 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 169 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 166 bp overlap

Motif DE_72h DE_72h-NFE2_MA0841.2 10 bp overlap

NFE2L2 1 dataset

ChIP K-562 ENCSR485GKE.NFE2L2.K-562 115 bp overlap

NR2F2 1 dataset

ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 274 bp overlap

NRIP1 1 dataset

ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 167 bp overlap

OTX1 2 datasets

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 234 bp overlap

Motif DE_72h DE_72h-PAX1_MA0779.2 16 bp overlap

Motif DE_72h DE_72h-PAX2_MA0067.3 16 bp overlap

Motif DE_72h DE_72h-PAX6_MA0069.1 14 bp overlap

Motif DE_72h DE_72h-PAX8_MA2094.1 16 bp overlap

Motif DE_72h DE_72h-PAX9_MA0781.2 16 bp overlap

ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 197 bp overlap

ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 363 bp overlap

PITX1 2 datasets

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap

PITX3 2 datasets

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

POLR3A 1 dataset

ChIP HeLa-S3 ENCFF777TAS 331 bp overlap

PRDM9 1 dataset

Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap

Motif DE_72h DE_72h-RARB_MA1552.2 13 bp overlap

RCOR1 1 dataset

ChIP K562 ENCFF216EEJ 297 bp overlap

RHOXF1 2 datasets

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

RXRA::VDR 1 dataset

Motif DE_72h DE_72h-RXRAVDR_MA0074.1 15 bp overlap

Motif DE_72h DE_72h-RXRG_MA1556.1 14 bp overlap

SIX2 2 datasets

Motif DE_72h DE_72h-SIX2_MA1119.2 11 bp overlap

ChIP HEK GSE73865.SIX2.HEK 201 bp overlap

SMAD2 2 datasets

Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap

ChIP endoderm GSE29422.SMAD2.endoderm 307 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 445 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 326 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 194 bp overlap

SMARCA4 3 datasets

ChIP K-562 ENCSR587OQL.SMARCA4.K-562 572 bp overlap

ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 373 bp overlap

ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 346 bp overlap

SMARCC1 2 datasets

ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 375 bp overlap

ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 287 bp overlap

SMARCE1 1 dataset

ChIP K-562 ENCSR157TCS.SMARCE1.K-562 231 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 306 bp overlap

ChIP K-562 ENCSR788RSW.SOX6.K-562 350 bp overlap

Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap

Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap

Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap

Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap

ChIP HEK293 ENCFF733RBE 537 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 356 bp overlap

TAL1 3 datasets

ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 161 bp overlap

ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 269 bp overlap

ChIP K562 ENCFF620GMX 385 bp overlap

ChIP K-562 ENCSR000EHA.TBP.K-562 162 bp overlap

TBX21 1 dataset

Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap

TCF12 2 datasets

ChIP K-562 ENCSR744WOO.TCF12.K-562 226 bp overlap

ChIP K562 ENCFF931DJY 391 bp overlap

TFAP2A 1 dataset

ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 141 bp overlap

TFAP2C 1 dataset

ChIP HCC1954 GSE126897.TFAP2C.HCC1954 324 bp overlap

Tcf21 1 dataset

Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap

ChIP HEK293 ENCFF906HIR 131 bp overlap

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 375 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 529 bp overlap

ZBTB26 1 dataset

Motif DE_72h DE_72h-ZBTB26_MA1579.2 8 bp overlap

ZNF135 1 dataset

Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap

ZNF24 1 dataset

ChIP K-562 ENCSR695EQB.ZNF24.K-562 227 bp overlap

ZNF263 1 dataset

Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap

ZNF394 1 dataset

ChIP HEK293 ENCFF236OPX 72 bp overlap

ZNF426 2 datasets

ChIP HEK293 ENCFF957XYN 129 bp overlap

ChIP HEK293 ENCSR224NFP.ZNF426.HEK293 69 bp overlap

ZNF460 1 dataset

Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap

ZNF547 1 dataset

ChIP HEK293 GSE76494.ZNF547.HEK293 149 bp overlap

ZNF586 1 dataset

ChIP HEK293 GSE76494.ZNF586.HEK293 149 bp overlap

ZNF708 1 dataset

Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap

ZNF85 1 dataset

Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap