chr1 : 147,540,314 147,540,507
193 bp 100 TFs 1 linked gene
This 193 bp open chromatin element is linked to BCL9 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
BCL9 992 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:147,535,314 – 147,545,507
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 108 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 124 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 193 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 110 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 157 bp overlap
BCL6 4 datasets
ChIP CD4 GSE59933.BCL6.CD4 136 bp overlap
ChIP HepG2 ENCFF423EJH 193 bp overlap
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 193 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 162 bp overlap
BCL6B 2 datasets
ChIP HEK293 ENCFF555YRB 111 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 193 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 193 bp overlap
BRD3 1 dataset
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 141 bp overlap
BRD4 14 datasets
ChIP BE2C GSE80151.BRD4.BE2C 193 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 193 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 74 bp overlap
ChIP Hep-G2 GSE123097.BRD4.Hep-G2 193 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 193 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 193 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 131 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 193 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 141 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 182 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 51 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 193 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 193 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 62 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 193 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 193 bp overlap
CTCF 56 datasets
ChIP IMR-90 ENCFF887MRH 53 bp overlap
ChIP Peyer's patch ENCFF746TCR 63 bp overlap
ChIP adrenal gland ENCFF596QXB 103 bp overlap
ChIP adrenal gland ENCFF886WNR 182 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 85 bp overlap
ChIP body of pancreas ENCFF438KTE 146 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 140 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 121 bp overlap
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 90 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 113 bp overlap
ChIP esophagus muscularis mucosa ENCFF045JBW 192 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR443WKD.CTCF.esophagus-muscularis-mucosa 141 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 89 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 58 bp overlap
ChIP gastrocnemius medialis ENCFF071DIF 193 bp overlap
ChIP gastrocnemius medialis ENCFF071DIF 193 bp overlap
ChIP gastrocnemius medialis ENCFF291LAG 100 bp overlap
ChIP gastrocnemius-medialis ENCSR071XWO.CTCF.gastrocnemius-medialis 54 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 159 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 178 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 185 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 132 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 123 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 153 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 163 bp overlap
ChIP islet ERP004003.CTCF.islet 60 bp overlap
ChIP lung ENCFF782RBX 57 bp overlap
ChIP lung ENCFF936XRK 57 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 77 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 84 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 90 bp overlap
ChIP ovary ENCFF845YUT 79 bp overlap
ChIP ovary ENCSR548DDS.CTCF.ovary 113 bp overlap
ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 81 bp overlap
ChIP sigmoid colon ENCFF086DZH 120 bp overlap
ChIP sigmoid colon ENCFF219LPW 150 bp overlap
ChIP sigmoid colon ENCFF848HFJ 113 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 95 bp overlap
ChIP thyroid gland ENCFF163TUI 193 bp overlap
ChIP thyroid gland ENCFF204HWS 107 bp overlap
ChIP thyroid gland ENCFF300RYK 184 bp overlap
ChIP thyroid gland ENCFF631QRY 74 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 193 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 86 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 101 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 163 bp overlap
ChIP tibial nerve ENCFF665IWH 159 bp overlap
ChIP tibial nerve ENCFF857SLT 116 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 177 bp overlap
ChIP transverse colon ENCFF471AZS 193 bp overlap
ChIP uterus ENCFF466ZUR 90 bp overlap
ChIP uterus ENCFF837OEY 193 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 56 bp overlap
ChIP uterus ENCSR684PGO.CTCF.uterus 55 bp overlap
ChIP vagina ENCFF057QBG 99 bp overlap
ChIP vagina ENCSR606TNN.CTCF.vagina 58 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 109 bp overlap
EP300 3 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 138 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 183 bp overlap
ChIP neural cell ENCFF442QNK 79 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 93 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 193 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 127 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 105 bp overlap
FOXA1 6 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 119 bp overlap
ChIP HepG2 ENCFF207NVJ 185 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 173 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 193 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 193 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 193 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 101 bp overlap
ChIP DE DE-FOXA2-1 193 bp overlap
ChIP DE DE-FOXA2-2 184 bp overlap
ChIP HepG2 ENCFF570ABM 193 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR508DQA.FOXK2.K-562 159 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 125 bp overlap
GATA4 1 dataset
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 158 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 116 bp overlap
ChIP K562 ENCFF928TKZ 184 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 160 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 193 bp overlap
HNF1A 4 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 193 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 149 bp overlap
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 193 bp overlap
ChIP HepG2 ENCFF352VYI 193 bp overlap
HNF1B 3 datasets
ChIP H9 ERP004206.HNF1B.H9 193 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 193 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 193 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 193 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 58 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 193 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 121 bp overlap
JUND 1 dataset
ChIP HepG2 ENCFF869OPW 52 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 193 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 100 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 146 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 138 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 154 bp overlap
MAFK 2 datasets
ChIP H1 ENCFF854XWE 179 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 105 bp overlap
MAZ 5 datasets
ChIP HEK293 ENCFF994GSG 193 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 156 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 105 bp overlap
ChIP IMR-90 ENCFF682IKN 125 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 57 bp overlap
MED1 5 datasets
ChIP G296S GSE85628.MED1.G296S 193 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 193 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 140 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 193 bp overlap
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 52 bp overlap
MED12 1 dataset
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 60 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 147 bp overlap
MTA2 2 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 119 bp overlap
ChIP K-562 ENCSR113LAS.MTA2.K-562 118 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 92 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 193 bp overlap
MYC 1 dataset
ChIP MIA-PaCa-2_CM GSE143804.MYC.MIA-PaCa-2_CM 94 bp overlap
MYCN 6 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 82 bp overlap
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 141 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 175 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 120 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 140 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 175 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 113 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 193 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 193 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 193 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 132 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 148 bp overlap
NFATC2 1 dataset
ChIP CD4_fly-DNA GSE116695.NFATC2.CD4_fly-DNA 97 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 184 bp overlap
NFE2L2 2 datasets
ChIP IMR-90 ENCFF059WEE 179 bp overlap
ChIP IMR-90 ENCSR197WGI.NFE2L2.IMR-90 161 bp overlap
NKX2-5 1 dataset
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 193 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 193 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 193 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 123 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 91 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 175 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 193 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 77 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 52 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 193 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 193 bp overlap
PRDM10 2 datasets
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 193 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 108 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 193 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 193 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 170 bp overlap
REST 2 datasets
ChIP HEK293 ENCSR896UBV.REST.HEK293 115 bp overlap
ChIP neural ENCSR000BTV.REST.neural 62 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 145 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 153 bp overlap
SMARCA4 6 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 193 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 99 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 193 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 193 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 150 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 193 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 152 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 193 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 152 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 186 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 193 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 169 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 163 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 109 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 148 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 122 bp overlap
TAF1 4 datasets
ChIP PFSK-1 ENCFF982LZL 121 bp overlap
ChIP PFSK-1 ENCFF982LZL 193 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 123 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 187 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 180 bp overlap
TEAD1 5 datasets
ChIP H69 GSE62274.TEAD1.H69 141 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 177 bp overlap
ChIP HepG2 ENCFF661PNM 193 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 193 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 193 bp overlap
TEAD4 8 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 189 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 193 bp overlap
ChIP H1 ENCFF778PAX 193 bp overlap
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 163 bp overlap
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 157 bp overlap
ChIP HepG2 ENCFF006QNB 193 bp overlap
ChIP HepG2 ENCFF250NXO 193 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 193 bp overlap
TSC22D1 1 dataset
ChIP MCF-7 ENCFF552PAC 68 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 57 bp overlap
YY1 2 datasets
ChIP ALL GSE145549.YY1.ALL 72 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 168 bp overlap
ZNF148 2 datasets
ChIP K-562 GSE121133.ZNF148.K-562 172 bp overlap
ChIP K-562 ENCSR018MSO.ZNF148.K-562 193 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 193 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 193 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 142 bp overlap
ZNF281 2 datasets
ChIP HepG2 ENCFF585QNU 193 bp overlap
ChIP K-562 GSE121133.ZNF281.K-562 116 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 98 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 147 bp overlap
ZNF512 2 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 185 bp overlap
ChIP K562 ENCFF601EMZ 193 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 114 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 78 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 192 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 176 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 123 bp overlap