chr6 : 139,473,118 139,473,729
611 bp 123 TFs 1 linked gene
This 611 bp open chromatin element is linked to LINC01625 and is bound by 123 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01625 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:139,468,118 – 139,478,729
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
AFF1 3 datasets
ChIP K-562 ENCSR241LIH.AFF1.K-562 313 bp overlap
ChIP K562 ENCFF096RYC 465 bp overlap
ChIP K562 ENCFF096RYC 296 bp overlap
AFF4 3 datasets
ChIP HeLa GSE40632.AFF4.HeLa 188 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 273 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 248 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 574 bp overlap
BARHL1 1 dataset
Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 157 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
BRD2 6 datasets
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 574 bp overlap
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 515 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 603 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 443 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 518 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 581 bp overlap
BRD3 5 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 300 bp overlap
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 376 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 261 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 219 bp overlap
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 254 bp overlap
BRD4 17 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 248 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 312 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 320 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 382 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 213 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 226 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 498 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 308 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 440 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 373 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 553 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 305 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 482 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 611 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 226 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 611 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 388 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 215 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 375 bp overlap
CHD2 1 dataset
ChIP K-562 ENCSR000EHD.CHD2.K-562 120 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 103 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 266 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 434 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 437 bp overlap
CTCF 7 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 446 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 198 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 226 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 178 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 183 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 174 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 385 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 540 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 308 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 142 bp overlap
ELF1 2 datasets
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 368 bp overlap
ChIP SK-N-MC_SHGFP_96H GSE61944.ELF1.SK-N-MC_SHGFP_96H 178 bp overlap
ELL2 2 datasets
ChIP HeLa GSE40632.ELL2.HeLa 279 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 220 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 320 bp overlap
ESR1 4 datasets
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 329 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 256 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 492 bp overlap
ETS1 2 datasets
ChIP SCC-25 GSE109884.ETS1.SCC-25 250 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 174 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 270 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 219 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE112961.FOSL1.BT-549 415 bp overlap
ChIP BT-549 GSE46166.FOSL1.BT-549 338 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 269 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 293 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 260 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 417 bp overlap
GATAD2A 1 dataset
ChIP K562 ENCFF071LJW 345 bp overlap
GFI1 1 dataset
ChIP THP-1 GSE90769.GFI1.THP-1 211 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 141 bp overlap
HMBOX1 1 dataset
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 127 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 213 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 205 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 150 bp overlap
JUN 5 datasets
ChIP BT-549 GSE46166.JUN.BT-549 318 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 273 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 315 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 457 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 513 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 418 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KLF4 2 datasets
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 261 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 223 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 152 bp overlap
KMT2A 2 datasets
ChIP THP-1 GSE83671.KMT2A.THP-1 596 bp overlap
ChIP THP-1 GSE79899.KMT2A.THP-1 196 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 555 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 229 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 284 bp overlap
MTA2 2 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 242 bp overlap
ChIP RH4 GSE155861.MTA2.RH4 219 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 451 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 497 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 504 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 211 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 298 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 419 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 325 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 333 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 401 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 237 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 157 bp overlap
NELFE 3 datasets
ChIP HeLa GSE125534.NELFE.HeLa 332 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 358 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 131 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 145 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 172 bp overlap
NR4A1 1 dataset
ChIP K-562 ENCSR130PDE.NR4A1.K-562 449 bp overlap
Nr2e3 2 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 176 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 400 bp overlap
POLR2A 13 datasets
ChIP SK-N-MC ENCFF088IVG 270 bp overlap
ChIP SK-N-MC ENCFF088IVG 387 bp overlap
ChIP adrenal gland ENCFF843OBJ 185 bp overlap
ChIP adrenal gland ENCFF892SFM 341 bp overlap
ChIP body of pancreas ENCFF084VJR 452 bp overlap
ChIP body of pancreas ENCFF501FEC 528 bp overlap
ChIP body of pancreas ENCFF675RCN 480 bp overlap
ChIP body of pancreas ENCFF727UBE 248 bp overlap
ChIP erythroblast ENCFF498VMR 611 bp overlap
ChIP erythroblast ENCFF498VMR 481 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 222 bp overlap
ChIP sigmoid colon ENCFF748YVT 135 bp overlap
ChIP tibial nerve ENCFF983HAU 463 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 468 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 351 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 268 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 182 bp overlap
RAD21 5 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 303 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 503 bp overlap
ChIP THP-1 GSE55407.RAD21.THP-1 143 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 381 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 281 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 580 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 450 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 208 bp overlap
RELA 1 dataset
ChIP K-562 ENCSR772EEN.RELA.K-562 508 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 575 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 5 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 256 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 168 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 269 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 478 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 384 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 256 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 361 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 242 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 401 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 163 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 163 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 163 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 449 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 212 bp overlap
SRSF3 1 dataset
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 202 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 433 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 433 bp overlap
STAT1 2 datasets
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 191 bp overlap
ChIP SET-2_cortistatin-A GSE100566.STAT1.SET-2_cortistatin-A 287 bp overlap
STAT3 3 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 192 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 459 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 163 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 415 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 382 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 323 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 239 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 59 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 360 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 315 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 334 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 191 bp overlap
ZFX 3 datasets
ChIP HEK293T ENCFF402JZW 521 bp overlap
ChIP K-562 ENCSR920ASP.ZFX.K-562 284 bp overlap
ChIP K562 ENCFF169LZT 481 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 381 bp overlap
ChIP HEK293 ENCFF033NQQ 397 bp overlap
ZIM3 2 datasets
ChIP HEK293 GSE76494.ZIM3.HEK293 182 bp overlap
ChIP HEK293T GSE78099.ZIM3.HEK293T 197 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 157 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 425 bp overlap
ChIP K562 ENCFF352SDL 594 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 253 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 195 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 364 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 82 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 558 bp overlap
ChIP K562 ENCFF547OSS 549 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 611 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 374 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF766 2 datasets
ChIP K562 ENCFF348LDO 372 bp overlap
ChIP K562 ENCFF348LDO 574 bp overlap
ZNF79 1 dataset
ChIP K-562 ENCSR995FUM.ZNF79.K-562 420 bp overlap
ZNF83 1 dataset
ChIP K562 ENCFF340RTV 376 bp overlap