chr1 : 119,006,484 119,007,307
823 bp 118 TFs 2 linked genes
This 823 bp open chromatin element is linked to ENSG00000239216 and ENSG00000226172 and is bound by 118 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000239216 5.1 kb Proximal Proximity
ENSG00000226172 5.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:119,001,484 – 119,012,307
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
AR 3 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 205 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 311 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 214 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 403 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 170 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 445 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 197 bp overlap
BRD4 7 datasets
ChIP 402-91 GSE111253.BRD4.402-91 213 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 241 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 291 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 392 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 818 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 256 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 339 bp overlap
CBFA2T2 2 datasets
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 229 bp overlap
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 218 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 565 bp overlap
CBX1 1 dataset
ChIP K-562 ENCSR948QLZ.CBX1.K-562 230 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 157 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 145 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 609 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 699 bp overlap
CREB1 1 dataset
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 427 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 591 bp overlap
CTCF 2 datasets
ChIP erythroid GSE67783.CTCF.erythroid 273 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 196 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 155 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 311 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 757 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 457 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 185 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 270 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 311 bp overlap
ESR1 4 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 592 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 207 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 390 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 311 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 35 datasets
ChIP A673 ENCFF790MVL 229 bp overlap
ChIP A673 ENCFF790MVL 186 bp overlap
ChIP A673 ENCFF955JRZ 303 bp overlap
ChIP A673 ENCFF955JRZ 276 bp overlap
ChIP A673 ENCFF955JRZ 409 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 324 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 741 bp overlap
ChIP GM23338 ENCFF613YON 823 bp overlap
ChIP GM23338 ENCFF886DXX 823 bp overlap
ChIP H1 ENCFF232NZA 823 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 248 bp overlap
ChIP SK-N-MC ENCFF434OHW 405 bp overlap
ChIP SK-N-MC ENCFF674XUJ 403 bp overlap
ChIP SK-N-SH ENCFF657FZK 242 bp overlap
ChIP astrocyte ENCFF365JTP 823 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 823 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 115 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 550 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 757 bp overlap
ChIP fibroblast of lung ENCFF479BAW 423 bp overlap
ChIP fibroblast of lung ENCFF479BAW 136 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 800 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 249 bp overlap
ChIP hepatocyte ENCFF552DZB 823 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 755 bp overlap
ChIP keratinocyte ENCFF070STK 823 bp overlap
ChIP keratinocyte ENCFF070STK 823 bp overlap
ChIP keratinocyte ENCFF070STK 143 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 460 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 784 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 823 bp overlap
ChIP neural progenitor cell ENCFF472NFV 823 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 508 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 718 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 165 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 332 bp overlap
GTF2F1 1 dataset
ChIP K-562 GSE120104.GTF2F1.K-562 164 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 152 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 244 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 448 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 274 bp overlap
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 225 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 258 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 595 bp overlap
ChIP H1 ENCFF078LED 655 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 304 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 273 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 497 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KMT2A 1 dataset
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 302 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 103 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 110 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 582 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 657 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 208 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 429 bp overlap
NOTCH1 2 datasets
ChIP HCC1599 GSE116871.NOTCH1.HCC1599 498 bp overlap
ChIP HCC1599_GSI GSE116871.NOTCH1.HCC1599_GSI 266 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 334 bp overlap
Nrf1 1 dataset
Motif ES_0h ES_0h-Nrf1_MA0506.3 12 bp overlap
OGG1 3 datasets
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 682 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 639 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 585 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PAX5 1 dataset
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 127 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 314 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 159 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 483 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 681 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 771 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 549 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 564 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 707 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 677 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 332 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 201 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 315 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 299 bp overlap
RBPJ 2 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 383 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 331 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 294 bp overlap
RNF2 4 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 311 bp overlap
ChIP H1 ENCFF239FFS 823 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 163 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 148 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 585 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 601 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 522 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 265 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 208 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 309 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 495 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 362 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 281 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 314 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 443 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 365 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 506 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 777 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 519 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 237 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 602 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
SP2 2 datasets
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 609 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 235 bp overlap
SRSF3 2 datasets
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 263 bp overlap
ChIP K-562 GSE120104.SRSF3.K-562 203 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 514 bp overlap
STAT2 1 dataset
ChIP THP-1_IFNb GSE128111.STAT2.THP-1_IFNb 137 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 524 bp overlap
SUZ12 9 datasets
ChIP GM12878 ENCFF498QAM 371 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 114 bp overlap
ChIP H1 ENCFF507HGF 196 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 823 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 823 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 234 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.SUZ12.hiPSC_WTa_RNase-neg 323 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 141 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TET2 1 dataset
ChIP Jurkat_RUNX1KD GSE85524.TET2.Jurkat_RUNX1KD 234 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 294 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 569 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 441 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 610 bp overlap
TRIM28 2 datasets
ChIP HCT-116 GSE72622.TRIM28.HCT-116 234 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 300 bp overlap
YY1 1 dataset
ChIP HEK293T_control GSE128106.YY1.HEK293T_control 403 bp overlap
ZBED4 3 datasets
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 485 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 511 bp overlap
ZBTB7A 2 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 228 bp overlap
ZIC1 1 dataset
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZIC5 1 dataset
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF549 1 dataset
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif ES_0h ES_0h-ZNF610_MA1713.2 10 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF93 1 dataset
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap