chr6 : 98,842,412 – 98,843,096
684 bp 114 TFs 3 linked genes
This 684 bp open chromatin element is linked to POU3F2, ENSG00000289501, and ENSG00000283010 and is bound by 114 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
POU3F2 7.8 kb Proximal Proximity
ENSG00000289501 9.5 kb Proximal Proximity
ENSG00000283010 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:98,837,412 – 98,848,096
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
114 transcription factors
Source
Cell type
AGO1 3 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 434 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 442 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 181 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 337 bp overlap
ARID1A 1 dataset
ChIP H9 GSE139260.ARID1A.H9 505 bp overlap
ARNTL 1 dataset
ChIP GSC_387 GSE134972.ARNTL.GSC_387 232 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 394 bp overlap
ChIP H1 ENCFF399KAM 390 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 684 bp overlap
ATF1 1 dataset
ChIP HCT-116 GSE130477.ATF1.HCT-116 255 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 684 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 684 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 684 bp overlap
BRD4 6 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 464 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 284 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 370 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 189 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 204 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 167 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 143 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 219 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 287 bp overlap
ChIP H1 ENCFF095JHA 518 bp overlap
CHD1 4 datasets
ChIP H1 ENCFF128BID 377 bp overlap
ChIP H1 ENCFF998XEK 433 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 231 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 402 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 287 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 204 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 369 bp overlap
CTCF 2 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 256 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 336 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 498 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 666 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 268 bp overlap
ELK1 1 dataset
ChIP WA01 ERP002417.ELK1.WA01 257 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 199 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 236 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 236 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 594 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 659 bp overlap
EZH2 24 datasets
ChIP B cell ENCFF803EMO 191 bp overlap
ChIP GM23338 ENCFF613YON 186 bp overlap
ChIP GM23338 ENCFF613YON 563 bp overlap
ChIP GM23338 ENCFF886DXX 309 bp overlap
ChIP H1 ENCFF232NZA 684 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 684 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 426 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 337 bp overlap
ChIP T98G GSE112240.EZH2.T98G 684 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 684 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 684 bp overlap
ChIP fibroblast of lung ENCFF479BAW 605 bp overlap
ChIP hESC GSE113817.EZH2.hESC 628 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 217 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 268 bp overlap
ChIP hepatocyte ENCFF552DZB 684 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 295 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 148 bp overlap
ChIP neural progenitor cell ENCFF018MKA 684 bp overlap
ChIP neural progenitor cell ENCFF472NFV 684 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 190 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 239 bp overlap
EZH2_phosphoT487 3 datasets
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 359 bp overlap
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 354 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 196 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 67 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 231 bp overlap
Foxn1 2 datasets
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
Motif ES_0h ES_0h-Foxn1_MA1684.1 6 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 126 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 417 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 646 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 529 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 373 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 362 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 231 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 193 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 327 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 331 bp overlap
JARID2 1 dataset
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 517 bp overlap
JUN 6 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 363 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 536 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 485 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 546 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 374 bp overlap
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 261 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 531 bp overlap
ChIP H1 ENCFF078LED 624 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 621 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 230 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 145 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 88 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 311 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 332 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 368 bp overlap
MTF2 2 datasets
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 136 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 406 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NFKB2 2 datasets
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap
NR1I2 2 datasets
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
Motif ES_0h ES_0h-NR1I2_MA1533.2 15 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 466 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 363 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 350 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 379 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 484 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 185 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 200 bp overlap
PCGF2 2 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 427 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 391 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 378 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 363 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 425 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 684 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 164 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 608 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 114 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 684 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 651 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 334 bp overlap
ChIP H1 ENCFF905HFL 612 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 684 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 464 bp overlap
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 350 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 684 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 659 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 219 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 309 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 241 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 282 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 563 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 222 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 205 bp overlap
SMAD2 3 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 116 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 626 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 340 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 471 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 514 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 417 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 306 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 500 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 236 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 684 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 411 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 600 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 342 bp overlap
SP1 2 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 249 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 238 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 269 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 292 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 460 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 566 bp overlap
STAT3 3 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 249 bp overlap
SUZ12 9 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 129 bp overlap
ChIP H1 ENCFF881NFR 684 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 179 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 607 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 642 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 684 bp overlap
ChIP NT2/D1 ENCFF574SXS 185 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 495 bp overlap
Stat4 2 datasets
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
TARDBP 1 dataset
ChIP Hep-G2 ENCSR145CXH.TARDBP.Hep-G2 154 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 374 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 211 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 257 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 273 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 68 bp overlap
TOP2A 1 dataset
ChIP KG-1_etoposide GSE114048.TOP2A.KG-1_etoposide 101 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 274 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 220 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 280 bp overlap
ZKSCAN5 1 dataset
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 232 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF202 1 dataset
ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 532 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF219 1 dataset
ChIP WTC11 ENCFF998WKU 397 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF341 2 datasets
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 159 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF563 1 dataset
ChIP HEK293 GSE76494.ZNF563.HEK293 307 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif ES_0h ES_0h-ZNF610_MA1713.2 10 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 307 bp overlap
ZNF707 1 dataset
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zfx 2 datasets
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap
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