chr6 : 41,644,322 41,644,671
349 bp 113 TFs 1 linked gene
This 349 bp open chromatin element is linked to MDFI and is bound by 113 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MDFI 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:41,639,322 – 41,649,671
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
113 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 183 bp overlap
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 210 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 161 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 345 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 219 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 133 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 99 bp overlap
BRD4 12 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 349 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 206 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 178 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 224 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 307 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 291 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 349 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 344 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 291 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 331 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 233 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 349 bp overlap
CBFB 2 datasets
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 188 bp overlap
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 271 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 191 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 349 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 229 bp overlap
CTCF 1 dataset
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 173 bp overlap
CTNNB1 2 datasets
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 284 bp overlap
ChIP hiPSC_TT-neg_D2 GSE132532.CTNNB1.hiPSC_TT-neg_D2 115 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 125 bp overlap
ESR1 6 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 290 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 349 bp overlap
ChIP MCF-7_TAMR_E2 GSE86538.ESR1.MCF-7_TAMR_E2 113 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 272 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 325 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 326 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 347 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 200 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 190 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 186 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 119 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 244 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 349 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 349 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 293 bp overlap
ChIP HepG2 ENCFF146SSF 319 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 132 bp overlap
HOXB13 1 dataset
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 173 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 184 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 339 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 184 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 220 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 161 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 121 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 237 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 260 bp overlap
ChIP HepG2 ENCFF507HCX 349 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 349 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 349 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 191 bp overlap
MED1 3 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 300 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 344 bp overlap
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 173 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 293 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 340 bp overlap
ChIP HepG2 ENCFF038CCB 349 bp overlap
MYC 3 datasets
ChIP GP5D GSE51234.MYC.GP5D 247 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 349 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 349 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 246 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 185 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 213 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 235 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 162 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 142 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NR2C2 1 dataset
ChIP Hep-G2 ENCSR559ZKI.NR2C2.Hep-G2 222 bp overlap
NR2F2 1 dataset
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 139 bp overlap
NR2F6 2 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 273 bp overlap
ChIP HepG2 ENCFF429VKC 349 bp overlap
NR5A1 1 dataset
ChIP HepG2 ENCFF970YZO 333 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 131 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 270 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 186 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 72 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 231 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 248 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 349 bp overlap
POLR2A 2 datasets
ChIP SK-N-MC ENCFF088IVG 136 bp overlap
ChIP SK-N-MC ENCFF088IVG 147 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 170 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 297 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 349 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 241 bp overlap
ChIP HEK293 ENCFF145WQQ 173 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 281 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 208 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 106 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 149 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 213 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 279 bp overlap
RELA 4 datasets
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 215 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 344 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 298 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 144 bp overlap
RUNX1 3 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 247 bp overlap
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 235 bp overlap
ChIP keratinocyte GSE98483.RUNX1.keratinocyte 278 bp overlap
RUNX2 1 dataset
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 165 bp overlap
RXRA 1 dataset
ChIP HepG2 ENCFF763IEA 349 bp overlap
RXRB 1 dataset
ChIP HepG2 ENCFF539ZAY 349 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 244 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 185 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 176 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 258 bp overlap
SMAD3 1 dataset
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 195 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 118 bp overlap
SMARCC1 2 datasets
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 60 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 196 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 84 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 83 bp overlap
SP7 3 datasets
ChIP HEK293 ENCFF733RBE 130 bp overlap
ChIP HEK293 ENCFF733RBE 60 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 284 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 196 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 349 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 125 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 264 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 231 bp overlap
TAF15 1 dataset
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 170 bp overlap
TCF7 1 dataset
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 175 bp overlap
TCF7L2 4 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 259 bp overlap
ChIP HCT116 ENCFF038POZ 66 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 135 bp overlap
ChIP HepG2 ENCFF510OLG 236 bp overlap
TFAP2C 2 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 208 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 91 bp overlap
TP53 13 datasets
ChIP GM00011 GSE55727.TP53.GM00011 207 bp overlap
ChIP H9 GSE142050.TP53.H9 267 bp overlap
ChIP HCT-116_Nutlin3a GSE125927.TP53.HCT-116_Nutlin3a 342 bp overlap
ChIP HCT-116_nutlin GSE86164.TP53.HCT-116_nutlin 194 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 214 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 310 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 322 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 150 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 128 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 349 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 349 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 266 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 199 bp overlap
TP63 21 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 322 bp overlap
ChIP HCC95 GSE46837.TP63.HCC95 206 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 345 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 336 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 284 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 349 bp overlap
ChIP KYSE-70 GSE46837.TP63.KYSE-70 155 bp overlap
ChIP LK2_DNp63 GSE137459.TP63.LK2_DNp63 321 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 246 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 325 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 349 bp overlap
ChIP TT GSE46837.TP63.TT 272 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 275 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 230 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 236 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 349 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 320 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 342 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 297 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 246 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 202 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 349 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 244 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 241 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 216 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 190 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 316 bp overlap
ZBTB46 1 dataset
ChIP HepG2 ENCFF806TPY 349 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 150 bp overlap
ChIP U2OS GSE96776.ZBTB48.U2OS 316 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 256 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 80 bp overlap
ZFX 3 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 349 bp overlap
ChIP HepG2 ENCFF016NZF 147 bp overlap
ChIP HepG2 ENCFF016NZF 349 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 349 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 100 bp overlap
ZNF223 1 dataset
ChIP HEK293 ENCFF408UAU 208 bp overlap
ZNF263 4 datasets
ChIP HEK293 ENCFF336CWQ 102 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 211 bp overlap
ChIP HepG2 ENCFF626SSV 93 bp overlap
ChIP WTC11 ENCFF893RTM 252 bp overlap
ZNF281 1 dataset
ChIP HepG2 ENCFF585QNU 120 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 125 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 218 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 309 bp overlap
ZNF467 2 datasets
ChIP HEK293 GSE76494.ZNF467.HEK293 164 bp overlap
ChIP HEK293 GSE76494.ZNF467.HEK293 79 bp overlap
ZNF48 1 dataset
ChIP HepG2 ENCFF362CDQ 218 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 268 bp overlap
ZNF701 1 dataset
ChIP HEK293 ENCFF041ZMJ 156 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 290 bp overlap
ZNF891 2 datasets
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 289 bp overlap
ChIP HepG2 ENCFF491CCY 349 bp overlap