chr5 : 171,307,254 – 171,307,622
368 bp 96 TFs 2 linked genes
This 368 bp open chromatin element is linked to TLX3 and ENSG00000275038 and is bound by 96 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TLX3 1.6 kb Proximal Proximity
ENSG00000275038 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:171,302,254 – 171,312,622
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP GSE110655.AR.LNCaP 111 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 71 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 56 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 61 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 288 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 287 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 368 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 368 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 248 bp overlap
BRD4 2 datasets
ChIP DND41 GSE54379.BRD4.DND41 356 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 368 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 368 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 240 bp overlap
CREB1 2 datasets
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 313 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 118 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 368 bp overlap
CTCF 13 datasets
ChIP DND-41 ENCFF913MRA 194 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 368 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 251 bp overlap
ChIP Loucy ENCFF359TVQ 368 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 314 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 166 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 212 bp overlap
ChIP SK-N-SH ENCFF731NJX 240 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 161 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 156 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 93 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 274 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 192 bp overlap
ChIP SK-N-SH ENCFF829RWA 177 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 117 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 97 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 220 bp overlap
ESR1 4 datasets
ChIP MCF-7_E2-1280-min-ERalpha GSE94023.ESR1.MCF-7_E2-1280-min-ERalpha 176 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 332 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 153 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 228 bp overlap
ESRRA 5 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 368 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 368 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 368 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 368 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 368 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 332 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 7 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 290 bp overlap
ChIP A673 ENCFF955JRZ 342 bp overlap
ChIP H1 ENCFF232NZA 368 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 273 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 320 bp overlap
ChIP neural progenitor cell ENCFF018MKA 368 bp overlap
ChIP neural progenitor cell ENCFF472NFV 368 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 73 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 97 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 86 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 305 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 339 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 129 bp overlap
GATA2 13 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 227 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 91 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 91 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 103 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 88 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 251 bp overlap
ChIP SH-SY5Y ENCFF485YIB 124 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 190 bp overlap
ChIP SK-N-SH ENCFF764OZD 180 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 267 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 113 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 55 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 93 bp overlap
GATA3 13 datasets
ChIP BE2C GSE65664.GATA3.BE2C 111 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 143 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 148 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 130 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 103 bp overlap
ChIP MCF-7 ENCFF352QVM 219 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 134 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 151 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 59 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 152 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 56 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 122 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 85 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 201 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 93 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 276 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 278 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 352 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 368 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 355 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 368 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 204 bp overlap
HDAC6 1 dataset
ChIP WA01 ENCSR000ATQ.HDAC6.WA01 114 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 268 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 256 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 227 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 368 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 245 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 183 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 295 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 182 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 145 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 148 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 332 bp overlap
MYB 4 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 136 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 130 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 153 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 77 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 138 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 271 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 249 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 123 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 368 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 148 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 166 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 73 bp overlap
ChIP hESC GSE18292.NANOG.hESC 54 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 336 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 201 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 107 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 65 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 165 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 136 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 299 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 228 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 308 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 368 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 153 bp overlap
ChIP H1 ENCFF833NJP 182 bp overlap
POU5F1 6 datasets
ChIP GM23338 ENCFF333SNB 252 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 368 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 368 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 147 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 216 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 176 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 368 bp overlap
PRDM14 4 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 368 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 368 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 368 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 337 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 168 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 205 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 368 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 368 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 368 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 221 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 134 bp overlap
RUNX1-RUNX1T1 1 dataset
ChIP AML GSE131939.RUNX1-RUNX1T1.AML 149 bp overlap
RUNX2 2 datasets
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 192 bp overlap
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 70 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 221 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 319 bp overlap
SMAD2_3 1 dataset
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 297 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 140 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 120 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 155 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 277 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 354 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 246 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 368 bp overlap
SMC3 1 dataset
ChIP SK-N-SH ENCFF791WFB 241 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 53 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 230 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 106 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 176 bp overlap
SS18 3 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 227 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 86 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 172 bp overlap
SUZ12 4 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 207 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 368 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 299 bp overlap
Sox1 1 dataset
Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 248 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 125 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 82 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 175 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 239 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 357 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 368 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 368 bp overlap
TP53 1 dataset
ChIP H9 GSE39912.TP53.H9 207 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 254 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 206 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 76 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 326 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 71 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCFF809BPK 293 bp overlap
ChIP HEK293 ENCFF809BPK 295 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 368 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 148 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 127 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 368 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 359 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 211 bp overlap
ZNF263 1 dataset
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 141 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 164 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 368 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 131 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 210 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 84 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 160 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 368 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 96 bp overlap
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