chr1 : 78,154,988 78,155,512
524 bp 127 TFs 0 linked genes
This 524 bp open chromatin element has no linked target genes and is bound by 127 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:78,149,988 – 78,160,512
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
127 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 184 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 189 bp overlap
BRD4 5 datasets
ChIP COLO-320 GSE73319.BRD4.COLO-320 524 bp overlap
ChIP HEK293_sgMYOD GSE129407.BRD4.HEK293_sgMYOD 229 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 382 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 297 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 433 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
ChIP COLO-320 GSE30026.CDX2.COLO-320 201 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 517 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 211 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 382 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 249 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 424 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 404 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 213 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 422 bp overlap
DUX4 3 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 361 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 423 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 212 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ERG 3 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 174 bp overlap
ChIP Jurkat GSE49091.ERG.Jurkat 163 bp overlap
ChIP VCaP GSE49091.ERG.VCaP 132 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 286 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 458 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 134 bp overlap
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 57 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 355 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 239 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 524 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 524 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 265 bp overlap
GCM2 1 dataset
Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GTF2B 1 dataset
ChIP IMR-90_TERT GSE38303.GTF2B.IMR-90_TERT 140 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 491 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 182 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 116 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXC12 1 dataset
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 280 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 231 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAX 4 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 185 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 347 bp overlap
ChIP WTC11 ENCFF223QFY 524 bp overlap
MED1 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 67 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 180 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 177 bp overlap
NANOG 8 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 517 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 516 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 169 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 524 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 313 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 277 bp overlap
ChIP hESC GSE18292.NANOG.hESC 98 bp overlap
NR3C1 1 dataset
ChIP NALM-6_CASP1 GSE67046.NR3C1.NALM-6_CASP1 186 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
OSR1 1 dataset
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 390 bp overlap
PGR 1 dataset
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU5F1 4 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 482 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 355 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 292 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 449 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 405 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 268 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 489 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 105 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 524 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 245 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 203 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 210 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 405 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 281 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 468 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 284 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 308 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 7 datasets
ChIP HNSC GSE69479.SOX2.HNSC 429 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 280 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 360 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 296 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 282 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 248 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 309 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 408 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 166 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAT3 1 dataset
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 173 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
TBP 1 dataset
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 210 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 297 bp overlap
TWIST1 1 dataset
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 226 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 335 bp overlap
ChIP HEK293T_control GSE128106.YY1.HEK293T_control 259 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 340 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 183 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 401 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 3 datasets
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 253 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 196 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 157 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 234 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 74 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 404 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 257 bp overlap