chr3 : 154,776,161 154,777,012
851 bp 147 TFs 0 linked genes
This 851 bp open chromatin element has no linked target genes and is bound by 147 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:154,771,161 – 154,782,012
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
147 transcription factors
Source
Cell type
AR 3 datasets
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 88 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 148 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 89 bp overlap
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
BARHL1 1 dataset
Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BHLHE41 1 dataset
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
BRD4 1 dataset
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 154 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CEBPB 2 datasets
ChIP HeLa-S3 ENCFF722WEG 103 bp overlap
ChIP monocyte GSE98367.CEBPB.monocyte 86 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 116 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
EP300 2 datasets
ChIP neural cell ENCFF442QNK 253 bp overlap
ChIP tibial nerve ENCFF346AYA 88 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 173 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 173 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 50 bp overlap
ChIP DE DE-FOXA2-1 778 bp overlap
ChIP DE DE-FOXA2-2 851 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 147 bp overlap
GATA2 3 datasets
ChIP ESF GSE108408.GATA2.ESF 146 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 225 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 78 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 706 bp overlap
ChIP DE DE-GATA4-2 562 bp overlap
ChIP foregut GSE117136.GATA4.foregut 289 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 411 bp overlap
ChIP DE DE-GATA6-2 599 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 424 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 115 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HMBOX1 2 datasets
ChIP HeLa GSE46237.HMBOX1.HeLa 260 bp overlap
ChIP HeLa GSE46237.HMBOX1.HeLa 69 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 184 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
MAX 3 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 118 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MITF 8 datasets
ChIP 501-mel GSE137522.MITF.501-mel 528 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 310 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 521 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 570 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 367 bp overlap
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 383 bp overlap
ChIP K562 ENCFF731XJJ 181 bp overlap
MLX 1 dataset
Motif DE_12h DE_12h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 87 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 471 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 213 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 515 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 256 bp overlap
ChIP hESC GSE18292.NANOG.hESC 95 bp overlap
ChIP hESC GSE18292.NANOG.hESC 100 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 66 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 289 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 101 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 114 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 172 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 111 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 217 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 181 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 331 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
RAD51 2 datasets
ChIP HepG2 ENCFF188FEZ 365 bp overlap
ChIP HepG2 ENCFF188FEZ 290 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RELA 1 dataset
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 63 bp overlap
REST 2 datasets
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
ChIP neural ENCSR000BTV.REST.neural 172 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
RUNX1 1 dataset
ChIP THP-1 GSE79899.RUNX1.THP-1 78 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 233 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 808 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 696 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 202 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 186 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 553 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 635 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 170 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 309 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 309 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 309 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 56 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 3 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 128 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 105 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 103 bp overlap
SREBF1 4 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
ChIP MCF-7 ENCFF254QOR 381 bp overlap
ChIP MCF-7 ENCSR197DJH.SREBF1.MCF-7 271 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 234 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 235 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 250 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFE3 2 datasets
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
ChIP K562 ENCFF697ABG 102 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TOE1 1 dataset
ChIP MCF-7 ENCFF544WQF 156 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 115 bp overlap
USF1 7 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 194 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 131 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 104 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 172 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 653 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
USF2 5 datasets
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 199 bp overlap
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 189 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 213 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 181 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 141 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap