chr3 : 140,202,917 140,204,067
1,150 bp 115 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to CLSTN2 and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CLSTN2 268.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:140,197,917 – 140,209,067
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 431 bp overlap
ARNTL 5 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 663 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 663 bp overlap
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 448 bp overlap
ChIP U2OS_cordycepin GSE130506.ARNTL.U2OS_cordycepin 517 bp overlap
ChIP U2OS_trough_DMSO GSE85096.ARNTL.U2OS_trough_DMSO 408 bp overlap
ATF2 2 datasets
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 228 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 295 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BCL6B 1 dataset
Motif DE_72h DE_72h-BCL6B_MA0731.1 17 bp overlap
BRD4 5 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 185 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 288 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 279 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 170 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 296 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 343 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 243 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 165 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 345 bp overlap
CTCF 2 datasets
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 123 bp overlap
ChIP GM13977 ENCFF528ESQ 119 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 216 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 242 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 216 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 569 bp overlap
ChIP neural cell ENCFF442QNK 433 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 189 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 887 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 390 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 541 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 700 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 315 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 258 bp overlap
ChIP neural progenitor cell ENCFF018MKA 586 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 234 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 484 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 253 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 415 bp overlap
ChIP DE DE-FOXA2-1 567 bp overlap
ChIP DE DE-FOXA2-2 316 bp overlap
ChIP DE DE-FOXA2-2 429 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 387 bp overlap
ChIP DE DE-GATA4-1 575 bp overlap
ChIP DE DE-GATA4-2 1061 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 263 bp overlap
ChIP foregut GSE117136.GATA4.foregut 551 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 1049 bp overlap
ChIP DE DE-GATA6-2 1129 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 571 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 359 bp overlap
ChIP foregut GSE117136.GATA6.foregut 328 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 292 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 367 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 369 bp overlap
HNF4A 1 dataset
Motif DE_72h DE_72h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_72h DE_72h-HNF4G_MA0484.3 9 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 203 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 388 bp overlap
Isl1 1 dataset
Motif DE_72h DE_72h-Isl1_MA1608.2 7 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 446 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 279 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 192 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 199 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 312 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 264 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 666 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 399 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 419 bp overlap
MEIS1 3 datasets
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
ChIP HEK293 ENCFF821TIY 385 bp overlap
MXI1 3 datasets
ChIP neural ENCSR934NHU.MXI1.neural 462 bp overlap
ChIP neural cell ENCFF623HQN 605 bp overlap
ChIP neural cell ENCFF623HQN 507 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 233 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 479 bp overlap
MYCN 3 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 452 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 236 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 279 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 612 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 322 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 606 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 290 bp overlap
ChIP hESC GSE18292.NANOG.hESC 149 bp overlap
ChIP hESC GSE20650.NANOG.hESC 196 bp overlap
NFIB 1 dataset
Motif DE_72h DE_72h-NFIB_MA1643.2 17 bp overlap
NFIX 1 dataset
Motif DE_72h DE_72h-NFIX_MA1528.2 14 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 183 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 69 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 270 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 353 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 404 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 222 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 189 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 200 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 325 bp overlap
PKNOX2 1 dataset
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 209 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 259 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 329 bp overlap
RAD21 1 dataset
ChIP neural cell ENCFF564MOT 505 bp overlap
RARA 3 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 294 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 254 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 230 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 250 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 376 bp overlap
ChIP neural cell ENCFF882LXX 235 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 190 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 183 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 198 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 392 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 601 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 371 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 443 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 268 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 214 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 316 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 146 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 285 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 171 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 289 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 464 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 476 bp overlap
SOX2 4 datasets
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
ChIP H9 GSE46837.SOX2.H9 299 bp overlap
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 278 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 394 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 574 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 238 bp overlap
TEAD1 1 dataset
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD4 5 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 337 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 373 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 337 bp overlap
TGIF1 1 dataset
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 190 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 190 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 249 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 145 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 231 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 144 bp overlap
ZFP42 1 dataset
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 351 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 158 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 251 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 591 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 201 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 513 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 235 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 491 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 345 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 551 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 375 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 266 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 485 bp overlap
ZNF513 2 datasets
ChIP HEK293 ENCFF457TCC 405 bp overlap
ChIP HEK293 ENCSR503DPC.ZNF513.HEK293 288 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 158 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 525 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 288 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 157 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 136 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 367 bp overlap
ZNF85 1 dataset
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 257 bp overlap