chr3 : 129,820,700 129,820,940
240 bp 106 TFs 0 linked genes
This 240 bp open chromatin element has no linked target genes and is bound by 106 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:129,815,700 – 129,825,940
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_L388M_shFOXA1_Ethanol GSE128883.AR.LNCaP_L388M_shFOXA1_Ethanol 146 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 142 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 240 bp overlap
ChIP K562 ENCFF938UXQ 240 bp overlap
BCL11A 1 dataset
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 134 bp overlap
BRD2 1 dataset
ChIP K-562 GSE140325.BRD2.K-562 188 bp overlap
BRD3 2 datasets
ChIP K-562 GSE140325.BRD3.K-562 180 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD3.K-562_dilution-6-100 200 bp overlap
BRD4 5 datasets
ChIP K-562 GSE140325.BRD4.K-562 96 bp overlap
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 163 bp overlap
ChIP K-562_JQ1_6h GSE99178.BRD4.K-562_JQ1_6h 194 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 106 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 120 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 202 bp overlap
ChIP K562 ENCFF963TXY 240 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 240 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 240 bp overlap
ChIP K562 ENCFF673OEZ 240 bp overlap
CBX2 1 dataset
ChIP K-562_HS GSE121182.CBX2.K-562_HS 119 bp overlap
CC2D1A 2 datasets
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 240 bp overlap
ChIP K562 ENCFF567XUT 240 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 236 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 155 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 103 bp overlap
CHAMP1 2 datasets
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 240 bp overlap
ChIP K562 ENCFF860ZIW 240 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 231 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 236 bp overlap
ChIP K562 ENCFF403WPG 240 bp overlap
CUX1 3 datasets
ChIP K-562 ENCSR000EFO.CUX1.K-562 211 bp overlap
ChIP K-562 GSE92882.CUX1.K-562 240 bp overlap
ChIP K562 ENCFF057AIX 240 bp overlap
EGR1 1 dataset
ChIP macrophage_D3 GSE136216.EGR1.macrophage_D3 175 bp overlap
ELF1 4 datasets
ChIP K-562 ENCSR502OEK.ELF1.K-562 230 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 178 bp overlap
ChIP K562 ENCFF496AKI 193 bp overlap
ChIP K562 ENCFF886KFV 240 bp overlap
ELF4 3 datasets
ChIP K-562 ENCSR638QHV.ELF4.K-562 227 bp overlap
ChIP K562 ENCFF200OMJ 240 bp overlap
ChIP K562 ENCFF454SBL 240 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 198 bp overlap
ChIP K562 ENCFF226VMS 224 bp overlap
ERG 1 dataset
ChIP arterial-endothelial-cells GSE128382.ERG.arterial-endothelial-cells 188 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 119 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 240 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 240 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 240 bp overlap
FOXA1 2 datasets
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 130 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 226 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 240 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR302AWT.FOXK2.K-562 184 bp overlap
FOXM1 2 datasets
ChIP K-562 ENCSR429QPP.FOXM1.K-562 240 bp overlap
ChIP K562 ENCFF255RHV 240 bp overlap
GATA1 9 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 222 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 113 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 219 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 194 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 168 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 139 bp overlap
ChIP K562 ENCFF094CMK 223 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 216 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 216 bp overlap
GATA2 10 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 169 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 240 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 181 bp overlap
ChIP K562 ENCFF544PCK 192 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 198 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 198 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 240 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 240 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 240 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 240 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 240 bp overlap
ChIP DE DE-GATA4-2 240 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 219 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 240 bp overlap
ChIP DE DE-GATA6-2 240 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 240 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 212 bp overlap
HDAC1 5 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 240 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 198 bp overlap
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 143 bp overlap
ChIP K562 ENCFF928TKZ 240 bp overlap
ChIP K562 ENCFF968WBH 240 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 240 bp overlap
ChIP K-562 GSE140325.HDAC2.K-562 227 bp overlap
HES1 2 datasets
ChIP K-562 ENCSR091JXL.HES1.K-562 240 bp overlap
ChIP K562 ENCFF919JVU 240 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 224 bp overlap
ChIP K562 ENCFF055GAZ 240 bp overlap
ChIP K562 ENCFF317JJX 240 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 203 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 199 bp overlap
HOXB13 9 datasets
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 203 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 193 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 141 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 239 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 78 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 189 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 215 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 240 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 240 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 240 bp overlap
ChIP K562 ENCFF348IBL 240 bp overlap
ChIP K562 ENCFF771OHZ 203 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 240 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 159 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 200 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 240 bp overlap
KDM1A 5 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 217 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 209 bp overlap
ChIP K562 ENCFF128TYE 240 bp overlap
ChIP K562 ENCFF133OLU 240 bp overlap
ChIP K562 ENCFF934ZRG 240 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 184 bp overlap
ChIP K562 ENCFF464PIV 240 bp overlap
KMT2A 1 dataset
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 240 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 103 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 114 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 240 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 231 bp overlap
LYL1 2 datasets
ChIP THP-1 GSE63484.LYL1.THP-1 161 bp overlap
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 182 bp overlap
MAX 2 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 95 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR163IUV.MAZ.K-562 146 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 206 bp overlap
MTA2 2 datasets
ChIP K-562 ENCSR113LAS.MTA2.K-562 207 bp overlap
ChIP K562 ENCFF880VZB 96 bp overlap
MYB 1 dataset
ChIP THP-1 GSE90769.MYB.THP-1 240 bp overlap
MYBL2 2 datasets
ChIP K-562 ENCSR162IEM.MYBL2.K-562 240 bp overlap
ChIP K562 ENCFF299JBQ 148 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 148 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 240 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 240 bp overlap
ChIP K562 ENCFF788MPU 240 bp overlap
ChIP K562 ENCFF866HRM 119 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 111 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 205 bp overlap
NFYA 1 dataset
ChIP K562 ENCFF666BET 221 bp overlap
NFYB 1 dataset
ChIP K-562 GSE26439.NFYB.K-562 176 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 98 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 156 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 112 bp overlap
PML 2 datasets
ChIP K-562 ENCSR000BQY.PML.K-562 240 bp overlap
ChIP K562 ENCFF801LKH 240 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 240 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 151 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCFF069PHD 240 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 152 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 240 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 142 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 136 bp overlap
PYGO2 1 dataset
ChIP K-562 ENCSR410DWC.PYGO2.K-562 203 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 238 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 206 bp overlap
RFX1 1 dataset
ChIP K-562 ENCSR968GIB.RFX1.K-562 221 bp overlap
RNF2 2 datasets
ChIP K562 ENCFF653BQJ 194 bp overlap
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 240 bp overlap
RUNX1 7 datasets
ChIP ME-1 GSE46044.RUNX1.ME-1 181 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 230 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 230 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 240 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 240 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 171 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 238 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 240 bp overlap
ChIP K562 ENCFF506JCB 193 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 240 bp overlap
ChIP K562 ENCFF690CFF 200 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 165 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 240 bp overlap
ChIP K562 ENCFF059YCJ 240 bp overlap
SPI1 32 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 78 bp overlap
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 216 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 215 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 183 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 230 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 223 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 137 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 63 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 168 bp overlap
ChIP GM12878 ENCFF134LCP 178 bp overlap
ChIP GM12891 ENCFF563IUT 121 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 222 bp overlap
ChIP HL-60 ENCFF645GBT 147 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 240 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 240 bp overlap
ChIP K-562 GSE74999.SPI1.K-562 206 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 240 bp overlap
ChIP K-562_SAHA GSE74999.SPI1.K-562_SAHA 240 bp overlap
ChIP K562 ENCFF410ORC 118 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 166 bp overlap
ChIP ME-1 GSE46044.SPI1.ME-1 124 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 171 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 221 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 80 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 164 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 150 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 240 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 116 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 57 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 79 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 240 bp overlap
SPIB 2 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 112 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 223 bp overlap
STAT1 2 datasets
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 240 bp overlap
ChIP SET-2_cortistatin-A GSE100566.STAT1.SET-2_cortistatin-A 165 bp overlap
TAL1 15 datasets
ChIP CD34 GSE52924.TAL1.CD34 135 bp overlap
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 240 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 137 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 235 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 240 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 240 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 153 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 151 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 236 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 184 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 209 bp overlap
ChIP K562 ENCFF620GMX 240 bp overlap
ChIP K562 ENCFF661CCK 126 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 187 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 229 bp overlap
TBL1XR1 2 datasets
ChIP K-562 ENCSR000EGB.TBL1XR1.K-562 174 bp overlap
ChIP K562 ENCFF899VEC 240 bp overlap
TCF12 5 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 240 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 208 bp overlap
ChIP K562 ENCFF909RDY 240 bp overlap
ChIP K562 ENCFF931DJY 229 bp overlap
ChIP ME-1 GSE46044.TCF12.ME-1 240 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 240 bp overlap
ChIP K562 ENCFF319QZT 240 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 199 bp overlap
TRIM24 3 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 184 bp overlap
ChIP K562 ENCFF616RIL 240 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 140 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 240 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 180 bp overlap
ZMIZ1 1 dataset
ChIP K-562 ENCSR000EFQ.ZMIZ1.K-562 118 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 206 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 151 bp overlap
ZNF7 1 dataset
ChIP K562 ENCFF096OHS 239 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 240 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 227 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 191 bp overlap