chr20 : 36,259,130 36,259,999
869 bp 159 TFs 5 linked genes
This 869 bp open chromatin element is linked to 5 target genes and is bound by 159 transcription factors.
Linked Genes
5 genes
Link type
Gene Expression Dist. to TSS Distance Link type
AAR2 23.0 kb Distal Multiome
DLGAP4 46.8 kb Distal Multiome+HiCAR
EPB41L1 104.7 kb Distal Multiome
NORAD 208.5 kb Distal Multiome
MYL9 282.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:36,254,130 – 36,264,999
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
159 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 101 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 61 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 437 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 224 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 107 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 178 bp overlap
Atf3 1 dataset
Motif DE_72h DE_72h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_72h DE_72h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_72h DE_72h-BACH2_MA1101.3 11 bp overlap
BARX2 1 dataset
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BATF 1 dataset
Motif DE_72h DE_72h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_72h DE_72h-BATF3_MA0835.3 7 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 526 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 506 bp overlap
BNC2 1 dataset
Motif DE_72h DE_72h-BNC2_MA1928.2 7 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 253 bp overlap
CTCF 4 datasets
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 177 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 391 bp overlap
ChIP BLaER1 ENCFF798NMV 137 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DEK 2 datasets
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 267 bp overlap
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 448 bp overlap
EBF1 1 dataset
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 549 bp overlap
ESR2 1 dataset
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
ESRRA 1 dataset
Motif DE_72h DE_72h-ESRRA_MA0592.4 9 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 234 bp overlap
ETV7 1 dataset
Motif DE_72h DE_72h-ETV7_MA1708.2 9 bp overlap
Ebf4 1 dataset
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
Motif DE_72h DE_72h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif DE_72h DE_72h-FOSL1_MA0477.3 9 bp overlap
FOSL2 4 datasets
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 192 bp overlap
ChIP HepG2 ENCFF548CXY 224 bp overlap
ChIP HepG2 ENCFF796NIA 257 bp overlap
FOXA1 1 dataset
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 664 bp overlap
ChIP DE DE-FOXA2-2 682 bp overlap
Motif DE_72h DE_72h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXI1 1 dataset
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_72h DE_72h-FOXS1_MA2118.1 8 bp overlap
GATA2 3 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 232 bp overlap
ChIP HepG2 ENCFF905PYM 371 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 221 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 698 bp overlap
ChIP DE DE-GATA4-2 765 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 267 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 678 bp overlap
ChIP DE DE-GATA6-2 721 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 621 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 615 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 538 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 677 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 619 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 379 bp overlap
GFI1 1 dataset
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 229 bp overlap
HDAC2 2 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 127 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 290 bp overlap
HINFP 1 dataset
Motif DE_72h DE_72h-HINFP_MA0131.3 8 bp overlap
HOXC13 1 dataset
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 592 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 655 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 414 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 647 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 664 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 309 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 470 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 702 bp overlap
JUNB 2 datasets
Motif DE_72h DE_72h-JUNB_MA0490.3 9 bp overlap
ChIP HepG2 ENCFF133OUQ 417 bp overlap
JUND 2 datasets
Motif DE_72h DE_72h-JUND_MA0491.3 9 bp overlap
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 138 bp overlap
Jun 1 dataset
Motif DE_72h DE_72h-Jun_MA0489.3 8 bp overlap
KLF17 2 datasets
Motif DE_72h DE_72h-KLF17_MA1514.2 14 bp overlap
Motif DE_72h DE_72h-KLF17_MA1514.2 14 bp overlap
LHX6 2 datasets
Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
MAF 1 dataset
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MAFF 1 dataset
Motif DE_72h DE_72h-MAFF_MA0495.4 11 bp overlap
MAFK 1 dataset
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 255 bp overlap
Mafg 2 datasets
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NKX2-3 2 datasets
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 2 datasets
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 2 datasets
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
NR1D1 1 dataset
Motif DE_72h DE_72h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_72h DE_72h-NR1D2_MA1532.2 15 bp overlap
NR5A1 1 dataset
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_72h DE_72h-NR6A1_MA1541.2 14 bp overlap
Nkx2-1 2 datasets
Motif DE_36h DE_36h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap
Nr2F6 1 dataset
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
Nr5A2 1 dataset
Motif DE_72h DE_72h-Nr5A2_MA0505.3 9 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POLR2A 1 dataset
ChIP HepG2 ENCFF422YUC 477 bp overlap
POU1F1 1 dataset
Motif DE_72h DE_72h-POU1F1_MA0784.3 14 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 168 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 603 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 470 bp overlap
RAD21 1 dataset
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 151 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 114 bp overlap
RBPJ 2 datasets
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RFX1 2 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
Motif DE_72h DE_72h-RFX1_MA0509.3 16 bp overlap
RFX3 2 datasets
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
Motif DE_72h DE_72h-RFX3_MA0798.3 16 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RREB1 2 datasets
Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
RXRA 1 dataset
ChIP HepG2 ENCFF763IEA 505 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 537 bp overlap
SKI 2 datasets
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 352 bp overlap
ChIP HepG2 ENCFF631IPX 451 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 316 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 647 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 573 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 477 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 242 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 364 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 481 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 359 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE36578.SMAD3.BG03 106 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 191 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 246 bp overlap
SMAD4 1 dataset
ChIP HepG2 ENCFF615GTE 155 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 705 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 184 bp overlap
SMARCB1 3 datasets
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 169 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 478 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 187 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 557 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 410 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 244 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 464 bp overlap
SP5 4 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 316 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 150 bp overlap
THAP1 1 dataset
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
THRA 1 dataset
Motif DE_72h DE_72h-THRA_MA1969.2 18 bp overlap
THRB 3 datasets
Motif DE_72h DE_72h-THRB_MA1576.2 18 bp overlap
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 254 bp overlap
ChIP HepG2 ENCFF476INC 431 bp overlap
Tbx6 2 datasets
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 173 bp overlap
ZBTB33 2 datasets
ChIP HepG2 ENCFF778UKV 337 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 390 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 279 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 238 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 151 bp overlap
ZIC1 2 datasets
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 357 bp overlap
ZIC4 2 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZKSCAN3 1 dataset
Motif DE_72h DE_72h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF184 1 dataset
Motif DE_72h DE_72h-ZNF184_MA2120.1 13 bp overlap
ZNF317 2 datasets
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF317.HEK293 55 bp overlap
ZNF324 1 dataset
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF410 1 dataset
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF418 2 datasets
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF451 1 dataset
ChIP HepG2 ENCFF602YJX 551 bp overlap
ZNF547 1 dataset
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap
ZNF549 1 dataset
Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap
ZNF684 1 dataset
Motif DE_72h DE_72h-ZNF684_MA1600.2 14 bp overlap
ZNF75A 2 datasets
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap
Zbtb2 1 dataset
Motif DE_72h DE_72h-Zbtb2_MA2340.1 10 bp overlap
Zic1::Zic2 3 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 3 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap