chr1:27,614,890–27,615,294

chr1 : 27,614,890 – 27,615,294

404 bp 84 TFs 9 linked genes

This 404 bp open chromatin element is linked to 9 target genes and is bound by 84 transcription factors.

Linked Genes

9 genes

Gene	Expression	Dist. to TSS	Distance	Link type
AHDC1		11.2 kb	Distal	Multiome
FAM76A		110.9 kb	Distal	Multiome
WASF2		125.1 kb	Distal	Multiome
STX12		158.1 kb	Distal	Multiome
PPP1R8		215.7 kb	Distal	Multiome
THEMIS2		257.4 kb	Distal	Multiome
SYTL1		273.1 kb	Distal	Multiome+HiCAR
TMEM222		292.8 kb	Distal	Multiome
RPA2		299.6 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

84 transcription factors

AFF1 2 datasets

ChIP K-562 ENCSR241LIH.AFF1.K-562 114 bp overlap

ChIP K562 ENCFF096RYC 194 bp overlap

ARHGAP35 2 datasets

ChIP K-562 ENCSR571BUF.ARHGAP35.K-562 190 bp overlap

ChIP K562 ENCFF198TWI 240 bp overlap

ARID1B 1 dataset

ChIP K562 ENCFF938UXQ 378 bp overlap

ARID4B 1 dataset

ChIP K562 ENCFF791HBV 136 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 241 bp overlap

ChIP K-562 ENCSR091GVJ.ATF1.K-562 83 bp overlap

ChIP K-562 ENCSR972ZBV.ATF7.K-562 95 bp overlap

BCOR 4 datasets

ChIP K-562 ENCSR808AKZ.BCOR.K-562 191 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 268 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 53 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 374 bp overlap

BMPR1A 1 dataset

ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 184 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 99 bp overlap

BRD4 3 datasets

ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 67 bp overlap

ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 132 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 404 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 404 bp overlap

ChIP hMSC GSE117084.CBX4.hMSC 178 bp overlap

ChIP HCT-116 GSE72622.CDK9.HCT-116 205 bp overlap

ChIP K562 ENCFF933NKI 119 bp overlap

CTBP1 2 datasets

ChIP K-562 ENCSR201NQZ.CTBP1.K-562 140 bp overlap

ChIP K562 ENCFF403WPG 201 bp overlap

ChIP K562 ENCFF245JDF 267 bp overlap

EP300 1 dataset

ChIP osteoblast ENCSR000AUD.EP300.osteoblast 204 bp overlap

ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 184 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 208 bp overlap

GFI1B 1 dataset

ChIP K-562 ENCSR509GDT.GFI1B.K-562 125 bp overlap

HDAC1 3 datasets

ChIP K-562 ENCSR711VWL.HDAC1.K-562 404 bp overlap

ChIP K-562 ENCSR387UWP.HDAC1.K-562 404 bp overlap

ChIP K562 ENCFF928TKZ 233 bp overlap

HDAC2 5 datasets

ChIP K-562 ENCSR075HTM.HDAC2.K-562 248 bp overlap

ChIP K-562 ENCSR893WSB.HDAC2.K-562 208 bp overlap

ChIP K562 ENCFF919OMP 73 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 78 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 206 bp overlap

HDGF 2 datasets

ChIP K-562 ENCSR197ALX.HDGF.K-562 289 bp overlap

ChIP K-562 ENCSR563YDA.HDGF.K-562 93 bp overlap

ChIP K562 ENCFF783OCM 253 bp overlap

HNRNPLL 2 datasets

ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 129 bp overlap

ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 112 bp overlap

HOXB8 1 dataset

ChIP K-562 GSE121208.HOXB8.K-562 81 bp overlap

ChIP K-562 ENCSR000EGT.IRF1.K-562 130 bp overlap

KDM1A 2 datasets

ChIP K562 ENCFF128TYE 67 bp overlap

ChIP K562 ENCFF934ZRG 64 bp overlap

KDM4A 3 datasets

ChIP WA01 ENCSR000AVC.KDM4A.WA01 316 bp overlap

ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 261 bp overlap

ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 170 bp overlap

KLF1 3 datasets

ChIP HEK293 ENCFF159QSW 190 bp overlap

ChIP HEK293 ENCSR859BMR.KLF1.HEK293 382 bp overlap

ChIP HEK293 GSE76494.KLF1.HEK293 238 bp overlap

KLF13 1 dataset

ChIP K-562 ENCSR608HVP.KLF13.K-562 404 bp overlap

KLF15 1 dataset

ChIP HEK293 GSE76494.KLF15.HEK293 152 bp overlap

KLF17 1 dataset

ChIP HEK293 ENCSR065WUF.KLF17.HEK293 167 bp overlap

ChIP keratinocyte GSE140991.KLF3.keratinocyte 386 bp overlap

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 246 bp overlap

KLF5 2 datasets

ChIP HEK293 GSE88976.KLF5.HEK293 267 bp overlap

ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 227 bp overlap

KLF8 2 datasets

ChIP HEK293 ENCFF929IAJ 342 bp overlap

ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 312 bp overlap

KLF9 3 datasets

ChIP GBM1A GSE62211.KLF9.GBM1A 157 bp overlap

ChIP HEK293 ENCFF588INF 279 bp overlap

ChIP HEK293 ENCSR076EZB.KLF9.HEK293 346 bp overlap

L3MBTL2 2 datasets

ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 179 bp overlap

ChIP K562 ENCFF320EQC 227 bp overlap

ChIP HEK293 GSE76494.MAZ.HEK293 186 bp overlap

ChIP K-562 ENCSR000EFX.MAZ.K-562 154 bp overlap

ChIP K562 ENCFF809XHP 311 bp overlap

MLLT1 2 datasets

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 192 bp overlap

ChIP K-562 ENCSR107GRP.MLLT1.K-562 67 bp overlap

ChIP K-562 ENCSR807BGP.MTA1.K-562 126 bp overlap

ChIP K-562 ENCSR411UYA.MTA2.K-562 233 bp overlap

MTA3 2 datasets

ChIP K-562 ENCSR180NCY.MTA3.K-562 404 bp overlap

ChIP K-562 ENCSR914NEI.MTA3.K-562 146 bp overlap

NELFE 1 dataset

ChIP K-562_HS GSE112379.NELFE.K-562_HS 81 bp overlap

NFIC 2 datasets

ChIP K-562 ENCSR796ITY.NFIC.K-562 83 bp overlap

ChIP K562 ENCFF167YID 90 bp overlap

PCBP1 1 dataset

ChIP K562 ENCFF382QWQ 95 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 404 bp overlap

POLR2A 4 datasets

ChIP GM12878 ENCFF899QYP 150 bp overlap

ChIP GM23338 ENCFF450WCS 404 bp overlap

ChIP spleen ENCFF044PYR 61 bp overlap

ChIP spleen ENCFF706IUS 218 bp overlap

POU5F1 1 dataset

ChIP BG03 GSE21614.POU5F1.BG03 261 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 313 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 282 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 317 bp overlap

SAP30 2 datasets

ChIP WA01 ENCSR000ATR.SAP30.WA01 52 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 269 bp overlap

SIN3A 4 datasets

ChIP H1 ENCFF042ZSL 131 bp overlap

ChIP K562 ENCFF984TCS 154 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 249 bp overlap

ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 175 bp overlap

SIRT6 1 dataset

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 363 bp overlap

SMARCA4 1 dataset

ChIP K-562 ENCSR643VTW.SMARCA4.K-562 201 bp overlap

SMARCA5 1 dataset

ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 130 bp overlap

SMARCE1 1 dataset

ChIP K-562 ENCSR157TCS.SMARCE1.K-562 90 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 59 bp overlap

ChIP HEK293 GSE76494.SP1.HEK293 259 bp overlap

ChIP K-562 ENCSR991ELG.SP1.K-562 404 bp overlap

ChIP K562 ENCFF907BMO 206 bp overlap

ChIP WTC11 ENCFF688PEU 258 bp overlap

ChIP WTC11 ENCFF688PEU 404 bp overlap

ChIP HEK293 ENCFF181QXT 322 bp overlap

ChIP HEK293 ENCSR807LQP.SP2.HEK293 368 bp overlap

ChIP HEK293 GSE76494.SP2.HEK293 283 bp overlap

ChIP HEK293 GSE76494.SP4.HEK293 404 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 309 bp overlap

SREBP2 1 dataset

ChIP HCC70 GSE126380.SREBP2.HCC70 206 bp overlap

STAG1 1 dataset

ChIP K562 ENCFF674HJF 138 bp overlap

SUZ12 1 dataset

ChIP K-562 ENCSR412CTM.SUZ12.K-562 76 bp overlap

TARDBP 1 dataset

ChIP K-562 ENCSR033VAZ.TARDBP.K-562 68 bp overlap

TFAP4 1 dataset

ChIP K562 ENCFF727PXG 303 bp overlap

THAP1 1 dataset

ChIP K-562 ENCSR000BNN.THAP1.K-562 106 bp overlap

ChIP K-562 GSE111469.USF2.K-562 107 bp overlap

VEZF1 2 datasets

ChIP K-562 ENCSR189YMA.VEZF1.K-562 256 bp overlap

ChIP K562 ENCFF053XDV 383 bp overlap

ChIP Huh-7 GSE97411.YY1.Huh-7 97 bp overlap

ZBTB2 1 dataset

ChIP K-562 ENCSR230PTV.ZBTB2.K-562 153 bp overlap

ZBTB24 1 dataset

ChIP HCT-116 GSE111683.ZBTB24.HCT-116 64 bp overlap

ZBTB48 3 datasets

ChIP HEK293 ENCFF809BPK 234 bp overlap

ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 189 bp overlap

ChIP U2OS GSE96776.ZBTB48.U2OS 67 bp overlap

ZBTB7A 4 datasets

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 404 bp overlap

ChIP K-562 GSE103445.ZBTB7A.K-562 404 bp overlap

ChIP K562 ENCFF579ZGM 341 bp overlap

ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 296 bp overlap

ZKSCAN1 1 dataset

ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 142 bp overlap

ZNF148 1 dataset

ChIP K-562 GSE121133.ZNF148.K-562 204 bp overlap

ZNF189 2 datasets

ChIP HEK293 ENCFF638TIB 178 bp overlap

ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 257 bp overlap

ZNF19 1 dataset

ChIP HEK293T GSE78099.ZNF19.HEK293T 241 bp overlap

ChIP K-562 ENCSR195QFV.ZNF3.K-562 93 bp overlap

ZNF331 2 datasets

ChIP GM23338 ENCFF410NSZ 137 bp overlap

ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 77 bp overlap

ZNF600 1 dataset

ChIP HEK293 ENCFF785JSX 256 bp overlap