This gene encodes a subunit of the heterotrimeric Replication Protein A (RPA) complex, which binds to single-stranded DNA (ssDNA), forming a nucleoprotein complex that plays an important role in DNA metabolism, being involved in DNA replication, repair, recombination, telomere maintenance, and co-ordinating the cellular response to DNA damage through activation of the ataxia telangiectasia and Rad3-related protein (ATR) kinase. The RPA complex protects single-stranded DNA from nucleases, prevents formation of secondary structures that would interfere with repair, and co-ordinates the recruitment and departure of different genome maintenance factors. The heterotrimeric complex has two different modes of ssDNA binding, a low-affinity and high-affinity mode, determined by which oligonucleotide/oligosaccharide-binding (OB) domains of the complex are utilized, and differing in the length of DNA bound. This subunit contains a single OB domain that participates in high-affinity DNA binding and also contains a winged helix domain at its carboxy terminus, which interacts with many genome maintenance protein. Post-translational modifications of the RPA complex also plays a role in co-ordinating different damage response pathways. [provided by RefSeq, Sep 2017]
Transcription factors with Perturb-seq knockdown data for RPA2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPA2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPA2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:27,614,890–27,615,294 | 299.6 kb | Distal (>10kb) Multiome | 84 | |
| chr1:27,659,614–27,660,451 | 254.6 kb | Distal (>10kb) Multiome | 525 | |
| chr1:27,662,782–27,663,455 | 251.5 kb | Distal (>10kb) Multiome | 386 | |
| chr1:27,725,017–27,726,553 | 188.9 kb | Distal (>10kb) Multiome | 896 | |
| chr1:27,770,363–27,771,047 | 144.1 kb | Distal (>10kb) Multiome | 104 | |
| chr1:27,772,649–27,773,796 | 141.6 kb | Distal (>10kb) Multiome | 826 | |
| chr1:27,830,416–27,831,407 | 84.0 kb | Distal (>10kb) Multiome | 899 | |
| chr1:27,872,169–27,873,143 | 42.2 kb | Distal (>10kb) Multiome | 412 | |
| chr1:27,914,296–27,915,026 | 42 bp | At TSS Multiome | 866 | |
| chr1:27,934,817–27,935,435 | 20.3 kb | Distal (>10kb) Multiome | 308 | |
| chr1:27,959,376–27,960,547 | 45.1 kb | Distal (>10kb) Multiome | 711 | |
| chr1:28,088,113–28,088,897 | 174.0 kb | Distal (>10kb) Multiome | 827 | |
| chr1:28,104,959–28,105,483 | 190.5 kb | Distal (>10kb) Multiome | 240 |
Genomic view of the RPA2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.