Located in nucleoplasm. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for FAM76A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FAM76A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FAM76A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:27,489,673–27,490,714 | 235.7 kb | Distal (>10kb) Multiome | 978 | |
| chr1:27,526,947–27,528,904 | 198.6 kb | Distal (>10kb) Multiome | 804 | |
| chr1:27,536,779–27,537,308 | 189.0 kb | Distal (>10kb) Multiome | 160 | |
| chr1:27,556,820–27,557,711 | 168.7 kb | Distal (>10kb) Multiome | 511 | |
| chr1:27,568,200–27,569,231 | 157.4 kb | Distal (>10kb) Multiome | 554 | |
| chr1:27,574,996–27,576,410 | 150.0 kb | Distal (>10kb) Multiome | 587 | |
| chr1:27,592,703–27,593,619 | 132.9 kb | Distal (>10kb) Multiome | 100 | |
| chr1:27,602,169–27,605,005 | 121.8 kb | Distal (>10kb) Multiome | 726 | |
| chr1:27,606,947–27,607,757 | 118.6 kb | Distal (>10kb) Multiome | 620 | |
| chr1:27,614,890–27,615,294 | 110.9 kb | Distal (>10kb) Multiome | 84 | |
| chr1:27,659,614–27,660,451 | 65.9 kb | Distal (>10kb) Multiome | 525 | |
| chr1:27,662,782–27,663,455 | 62.7 kb | Distal (>10kb) Multiome | 386 | |
| chr1:27,725,017–27,726,553 | 172 bp | At TSS Multiome | 896 | |
| chr1:27,770,363–27,771,047 | 44.7 kb | Distal (>10kb) Multiome | 104 | |
| chr1:27,772,649–27,773,796 | 47.2 kb | Distal (>10kb) Multiome | 826 | |
| chr1:27,830,416–27,831,407 | 104.8 kb | Distal (>10kb) Multiome | 899 | |
| chr1:27,872,169–27,873,143 | 146.5 kb | Distal (>10kb) Multiome | 412 | |
| chr1:27,914,296–27,915,026 | 188.7 kb | Distal (>10kb) Multiome | 866 | |
| chr1:27,934,817–27,935,435 | 209.0 kb | Distal (>10kb) Multiome | 308 | |
| chr1:27,959,376–27,960,547 | 233.9 kb | Distal (>10kb) Multiome | 711 |
Genomic view of the FAM76A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.