chr17 : 39,177,249 39,177,669
420 bp 139 TFs 0 linked genes
This 420 bp open chromatin element has no linked target genes and is bound by 139 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:39,172,249 – 39,182,669
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
139 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 219 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 238 bp overlap
AR 2 datasets
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 190 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 144 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 224 bp overlap
ATF2 2 datasets
Motif DE_24h DE_24h-ATF2_MA1632.2 10 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 254 bp overlap
ATOH7 1 dataset
Motif DE_24h DE_24h-ATOH7_MA1468.1 10 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 75 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 65 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 110 bp overlap
CDK9 3 datasets
ChIP BT-474 ERP010664.CDK9.BT-474 340 bp overlap
ChIP BT-474_INHHDAC ERP010664.CDK9.BT-474_INHHDAC 354 bp overlap
ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap
CHD2 3 datasets
ChIP H1 ENCFF991MKH 331 bp overlap
ChIP K-562 ENCSR000EHD.CHD2.K-562 144 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 222 bp overlap
CREB1 8 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 121 bp overlap
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 304 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 264 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP Ishikawa ENCFF197ISF 337 bp overlap
ChIP Ishikawa ENCSR000BUR.CREB1.Ishikawa 191 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 265 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
CTCF 1 dataset
ChIP HCT-116 GSE131606.CTCF.HCT-116 209 bp overlap
CTCFL 1 dataset
Motif DE_24h DE_24h-CTCFL_MA1102.3 8 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 390 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 169 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 135 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 297 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 147 bp overlap
EHF 1 dataset
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_24h DE_24h-ELK4_MA0076.3 9 bp overlap
ERF 1 dataset
Motif DE_24h DE_24h-ERF_MA0760.2 9 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ESR1 16 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 83 bp overlap
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 308 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 137 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 211 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 226 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 290 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 268 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 213 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 256 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 165 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 420 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 420 bp overlap
ChIP T-47D-B_E2_R5020 GSE80358.ESR1.T-47D-B_E2_R5020 189 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 226 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 317 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 241 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 329 bp overlap
ETS1 3 datasets
Motif DE_24h DE_24h-ETS1_MA0098.4 9 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 181 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 349 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif DE_24h DE_24h-ETV2_MA0762.2 9 bp overlap
Erg 1 dataset
Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FLI1 2 datasets
Motif DE_24h DE_24h-FLI1_MA0475.3 9 bp overlap
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 179 bp overlap
GABPA 2 datasets
Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap
ChIP MCF-7 GSE72082.GABPA.MCF-7 111 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 50 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 229 bp overlap
Gli1 2 datasets
Motif DE_24h DE_24h-Gli1_MA1990.2 10 bp overlap
Motif DE_24h DE_24h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_24h DE_24h-Gli2_MA0734.4 9 bp overlap
HAND2 1 dataset
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 107 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif DE_24h DE_24h-HIC2_MA0738.2 6 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 245 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 254 bp overlap
HSF1 1 dataset
ChIP SK-BR-3 GSE38901.HSF1.SK-BR-3 89 bp overlap
IKZF1 1 dataset
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
INSM1 1 dataset
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
Ikzf3 1 dataset
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 160 bp overlap
JUN 4 datasets
Motif DE_24h DE_24h-JUN_MA0488.2 10 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 266 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 349 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 352 bp overlap
JUND 1 dataset
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 133 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 278 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 221 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 315 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 178 bp overlap
KLF15 2 datasets
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
ChIP HEK293 GSE76494.KLF15.HEK293 194 bp overlap
KLF17 3 datasets
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap
Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap
KLF3 2 datasets
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 151 bp overlap
KLF9 1 dataset
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 70 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP Ishikawa ENCFF064TDQ 417 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 355 bp overlap
ChIP WTC11 ENCFF223QFY 420 bp overlap
MED1 3 datasets
ChIP MCF-7_SHCTR GSE60270.MED1.MCF-7_SHCTR 218 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 240 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 305 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 119 bp overlap
MYOD1 2 datasets
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 197 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 257 bp overlap
NFIB 1 dataset
Motif DE_24h DE_24h-NFIB_MA1643.2 17 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 217 bp overlap
NFYB 5 datasets
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 174 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 280 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 204 bp overlap
ChIP K562 ENCFF709RXX 317 bp overlap
ChIP WTC11 ENCFF751ZTQ 232 bp overlap
NOTCH1 2 datasets
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 110 bp overlap
ChIP HPBALL GSE39263.NOTCH1.HPBALL 256 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
NR2F1 1 dataset
Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 140 bp overlap
NRF1 1 dataset
ChIP T-47D_HAEGIN2 GSE59935.NRF1.T-47D_HAEGIN2 169 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 263 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 208 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 331 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 420 bp overlap
ChIP K562 ENCFF648YPL 420 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 369 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 349 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 246 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 208 bp overlap
PPARD 1 dataset
Motif DE_24h DE_24h-PPARD_MA1550.2 14 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 2 datasets
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 241 bp overlap
RBFOX2 4 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 298 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 296 bp overlap
ChIP K562 ENCFF196WTG 420 bp overlap
ChIP K562 ENCFF967GRF 420 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 128 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 143 bp overlap
REST 2 datasets
Motif DE_24h DE_24h-REST_MA0138.3 20 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 103 bp overlap
RFX1 2 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 252 bp overlap
ChIP K562 ENCFF421AVO 351 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 420 bp overlap
RXRB 1 dataset
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SNAI2 1 dataset
Motif DE_24h DE_24h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SP1 5 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 206 bp overlap
ChIP H1 ENCFF263FUH 196 bp overlap
ChIP HEK293 GSE76494.SP1.HEK293 150 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 342 bp overlap
ChIP WTC11 ENCFF688PEU 404 bp overlap
SP2 6 datasets
ChIP H1 ENCFF903ACN 357 bp overlap
ChIP HEK293 ENCFF181QXT 322 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 347 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 231 bp overlap
ChIP HEK293T ERP007114.SP2.HEK293T 342 bp overlap
ChIP WA01 ENCSR000BQG.SP2.WA01 181 bp overlap
SP4 2 datasets
ChIP HEK293 GSE76494.SP4.HEK293 334 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 151 bp overlap
Stat6 1 dataset
Motif DE_24h DE_24h-Stat6_MA0520.2 10 bp overlap
TAF1 3 datasets
ChIP Ishikawa ENCFF271ZVL 356 bp overlap
ChIP Ishikawa ENCFF271ZVL 340 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 186 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 168 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF4 1 dataset
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TEAD4 1 dataset
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 394 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 109 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1574.2 13 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 88 bp overlap
TWIST1 1 dataset
Motif DE_24h DE_24h-TWIST1_MA1123.3 8 bp overlap
USF1 2 datasets
ChIP Ishikawa ENCFF728IEG 261 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 162 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 376 bp overlap
YY1 3 datasets
ChIP Ishikawa ENCFF505XQX 329 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 264 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 213 bp overlap
ZBED4 1 dataset
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
ZBTB33 5 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 420 bp overlap
ChIP K562 ENCFF875HLX 343 bp overlap
ChIP MCF-7 ENCFF622BUU 321 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 220 bp overlap
ChIP WTC11 ENCFF048CFR 247 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 176 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZFP42 1 dataset
Motif DE_24h DE_24h-ZFP42_MA1651.2 13 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF141 1 dataset
ChIP HEK293T GSE78099.ZNF141.HEK293T 65 bp overlap
ZNF175 1 dataset
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 271 bp overlap
ZNF320 2 datasets
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF682 2 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif DE_24h DE_24h-ZNF684_MA1600.2 14 bp overlap
ZNF701 1 dataset
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
ZNF708 1 dataset
Motif DE_24h DE_24h-ZNF708_MA1730.2 9 bp overlap
ZNF93 1 dataset
Motif DE_24h DE_24h-ZNF93_MA1721.2 14 bp overlap
Zfp335 1 dataset
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap