chr1 : 244,439,170 – 244,440,059
889 bp 127 TFs 0 linked genes
This 889 bp open chromatin element has no linked target genes and is bound by 127 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:244,434,170 – 244,445,059
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
127 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 147 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 696 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 393 bp overlap
ChIP K562 ENCFF817JQF 623 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 370 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 148 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 317 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 258 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 631 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 277 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 113 bp overlap
CTBP1 1 dataset
ChIP K562 ENCFF403WPG 545 bp overlap
CTCF 2 datasets
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 301 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 218 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 310 bp overlap
ChIP BLaER1 ENCFF274GAT 305 bp overlap
ChIP BLaER1 ENCFF460KDD 366 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 157 bp overlap
E2F8 2 datasets
ChIP K-562 ENCSR953DVM.E2F8.K-562 291 bp overlap
ChIP K562 ENCFF985IKY 347 bp overlap
EHF 1 dataset
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 272 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 222 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap
Elf5 3 datasets
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 339 bp overlap
GABPA 1 dataset
Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 449 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 441 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 445 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 480 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 455 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 405 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 357 bp overlap
HOXD12::ELK1 1 dataset
Motif DE_24h DE_24h-HOXD12ELK1_MA1958.2 13 bp overlap
HSF2 1 dataset
Motif DE_24h DE_24h-HSF2_MA0770.1 13 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 246 bp overlap
IKZF2 3 datasets
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 177 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 430 bp overlap
JUN 3 datasets
ChIP 786-O GSE86092.JUN.786-O 295 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 268 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 184 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 300 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 569 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 241 bp overlap
KLF12 3 datasets
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 3 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 559 bp overlap
KLF7 3 datasets
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
Motif DE_36h DE_36h-KLF7_MA1959.2 8 bp overlap
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 123 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 150 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 219 bp overlap
MED1 3 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 199 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 199 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 590 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 140 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 406 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 276 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 491 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 218 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 321 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 140 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 386 bp overlap
ChIP K562 ENCFF167YID 457 bp overlap
NFIC::TLX1 2 datasets
Motif DE_24h DE_24h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_36h DE_36h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 2 datasets
Motif DE_24h DE_24h-NFIX_MA1528.2 14 bp overlap
Motif DE_36h DE_36h-NFIX_MA1528.2 14 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 193 bp overlap
NKX2-3 2 datasets
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 2 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 2 datasets
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF239RSE 257 bp overlap
NR5A1 1 dataset
Motif DE_24h DE_24h-NR5A1_MA1540.3 12 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF791UHF 561 bp overlap
Nkx2-1 2 datasets
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_36h DE_36h-Nkx2-1_MA1994.2 7 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 521 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 390 bp overlap
POLR2A 20 datasets
ChIP GM12878 ENCFF521FXC 243 bp overlap
ChIP GM12891 ENCFF127ICP 359 bp overlap
ChIP GM12891 ENCFF379FCI 501 bp overlap
ChIP GM12891 ENCFF379FCI 501 bp overlap
ChIP GM12892 ENCFF245LYF 421 bp overlap
ChIP GM12892 ENCFF245LYF 214 bp overlap
ChIP GM12892 ENCFF542ZFO 545 bp overlap
ChIP H1 ENCFF566JSR 631 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
ChIP HeLa-S3 ENCFF224LWS 235 bp overlap
ChIP HeLa-S3 ENCFF224LWS 705 bp overlap
ChIP HeLa-S3 ENCFF455YYQ 545 bp overlap
ChIP HeLa-S3 ENCFF773DNG 155 bp overlap
ChIP HeLa-S3 ENCFF773DNG 522 bp overlap
ChIP K562 ENCFF215CWW 333 bp overlap
ChIP K562 ENCFF215CWW 315 bp overlap
ChIP K562 ENCFF514URW 405 bp overlap
ChIP K562 ENCFF643HGX 511 bp overlap
ChIP K562 ENCFF836GHX 495 bp overlap
ChIP spleen ENCFF446ZGT 521 bp overlap
RAD21 1 dataset
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 154 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 568 bp overlap
RELA 1 dataset
ChIP KB_IL GSE52469.RELA.KB_IL 133 bp overlap
REST 3 datasets
Motif DE_24h DE_24h-REST_MA0138.3 20 bp overlap
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
Runx1 2 datasets
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 430 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 317 bp overlap
ChIP HUVEC-C_PBS GSE134556.SMAD2-3.HUVEC-C_PBS 251 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 622 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 284 bp overlap
SMAD3 1 dataset
Motif DE_24h DE_24h-SMAD3_MA0795.1 10 bp overlap
SMAD5 1 dataset
Motif DE_24h DE_24h-SMAD5_MA1557.1 10 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 213 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 283 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 352 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 309 bp overlap
SP1 5 datasets
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP K562 ENCFF088XXV 625 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 262 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 557 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 360 bp overlap
SP4 3 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 537 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 216 bp overlap
SPI1 5 datasets
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 178 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 171 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 171 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 153 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
SPIB 1 dataset
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
SRF 1 dataset
ChIP K562 ENCFF766EOO 397 bp overlap
SUPT5H 5 datasets
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 271 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 385 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 326 bp overlap
ChIP K562 ENCFF902PAW 278 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 104 bp overlap
Smad4 1 dataset
Motif DE_24h DE_24h-Smad4_MA1153.2 7 bp overlap
Spi1 3 datasets
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 116 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP K-562 GSE55306.TBP.K-562 263 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 188 bp overlap
TFAP4 2 datasets
ChIP K562 ENCFF727PXG 528 bp overlap
ChIP K562 ENCFF727PXG 293 bp overlap
THAP1 4 datasets
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
Motif DE_36h DE_36h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
THRAP3 1 dataset
ChIP K562 ENCFF445ZEJ 72 bp overlap
Tfcp2l1 1 dataset
Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 166 bp overlap
ZBTB12 1 dataset
Motif DE_24h DE_24h-ZBTB12_MA1649.2 7 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 265 bp overlap
ChIP HEK293 ENCFF865LIO 590 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 617 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 433 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 331 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 673 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 292 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 305 bp overlap
ZKSCAN1 1 dataset
Motif DE_24h DE_24h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF121 2 datasets
ChIP HEK293 GSE76494.ZNF121.HEK293 208 bp overlap
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF143 3 datasets
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 160 bp overlap
ChIP K-562 GSE39263.ZNF143.K-562 182 bp overlap
ZNF146 2 datasets
ChIP HEK293 ENCFF602LWH 204 bp overlap
ChIP HEK293 ENCSR689YFA.ZNF146.HEK293 113 bp overlap
ZNF175 1 dataset
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
ZNF184 2 datasets
Motif DE_24h DE_24h-ZNF184_MA2120.1 13 bp overlap
Motif DE_36h DE_36h-ZNF184_MA2120.1 13 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 384 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCFF641ICT 481 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 591 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 667 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 713 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 521 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 273 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 300 bp overlap
ZNF501 1 dataset
ChIP HEK293 ENCFF066RAQ 311 bp overlap
ZNF530 3 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 228 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 441 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 285 bp overlap
ZNF563 1 dataset
ChIP HEK293 GSE76494.ZNF563.HEK293 239 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 223 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 339 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 293 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 239 bp overlap
ZNF8 1 dataset
ChIP HEK293 GSE76494.ZNF8.HEK293 255 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 283 bp overlap
Zfp809 2 datasets
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
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