chr16 : 51,544,684 – 51,545,392
708 bp 122 TFs 1 linked gene
This 708 bp open chromatin element is linked to HNRNPA1L3 and is bound by 122 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HNRNPA1L3 8.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:51,539,684 – 51,550,392
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
122 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.AR.LNCaP_FENG_shFOXA1_Ethanol 186 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 280 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 503 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 697 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 214 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 430 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 358 bp overlap
ChIP HEK293T GSE39579.BRD3.HEK293T 243 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 89 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 220 bp overlap
CDX2 1 dataset
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 412 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 177 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 594 bp overlap
CREB1 2 datasets
ChIP WA01 ENCSR000BSN.CREB1.WA01 197 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 130 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 364 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 316 bp overlap
ELK1::HOXB13 1 dataset
Motif DE_72h DE_72h-ELK1HOXB13_MA1932.2 15 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 308 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 133 bp overlap
ERF::HOXB13 1 dataset
Motif DE_72h DE_72h-ERFHOXB13_MA1937.2 13 bp overlap
ESR1 1 dataset
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 165 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 527 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 230 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 460 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 231 bp overlap
FOXA1 5 datasets
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 255 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 187 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 380 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 269 bp overlap
FOXA2 7 datasets
ChIP DE DE-FOXA2-1 704 bp overlap
ChIP DE DE-FOXA2-2 708 bp overlap
Motif DE_72h DE_72h-FOXA2_MA0047.4 8 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 370 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 476 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 552 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 299 bp overlap
FOXA3 1 dataset
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_72h DE_72h-FOXD1_MA0031.2 7 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
FOXF2 1 dataset
Motif DE_72h DE_72h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_72h DE_72h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_72h DE_72h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_72h DE_72h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_72h DE_72h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP1 2 datasets
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
ChIP H9 GSE31006.FOXP1.H9 448 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_72h DE_72h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_72h DE_72h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_72h DE_72h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_72h DE_72h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_72h DE_72h-Foxo3_MA0157.4 7 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 269 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 580 bp overlap
ChIP DE DE-GATA4-2 641 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 485 bp overlap
ChIP DE DE-GATA6-2 649 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 491 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 708 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 525 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 638 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 708 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 622 bp overlap
GLIS1 3 datasets
Motif DE_48h DE_48h-GLIS1_MA0735.2 15 bp overlap
ChIP HEK293 ENCFF299RSE 402 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 533 bp overlap
GLIS2 1 dataset
Motif DE_48h DE_48h-GLIS2_MA0736.1 14 bp overlap
GLIS3 2 datasets
Motif DE_48h DE_48h-GLIS3_MA0737.1 14 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 337 bp overlap
HOXB13 3 datasets
ChIP LNCaP_Veh GSE148928.HOXB13.LNCaP_Veh 250 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 300 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 145 bp overlap
HOXB4 1 dataset
Motif DE_72h DE_72h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_72h DE_72h-HOXB9_MA1503.2 9 bp overlap
HOXC11 1 dataset
Motif DE_72h DE_72h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_72h DE_72h-HOXC12_MA0906.2 10 bp overlap
HOXC13 1 dataset
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
HOXC4 1 dataset
Motif DE_72h DE_72h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_72h DE_72h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_72h DE_72h-HOXD10_MA1506.2 10 bp overlap
HOXD12 1 dataset
Motif DE_72h DE_72h-HOXD12_MA0873.2 10 bp overlap
HOXD12::ELK1 1 dataset
Motif DE_72h DE_72h-HOXD12ELK1_MA1958.2 13 bp overlap
HOXD4 1 dataset
Motif DE_72h DE_72h-HOXD4_MA1507.2 6 bp overlap
Hoxa11 1 dataset
Motif DE_72h DE_72h-Hoxa11_MA0911.2 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 205 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 531 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 293 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 620 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 398 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 432 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 519 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 643 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 149 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 168 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 257 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 312 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 220 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 175 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 579 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 127 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 365 bp overlap
NANOG 8 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 643 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 237 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 134 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 207 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 297 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 610 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 275 bp overlap
ChIP hESC GSE18292.NANOG.hESC 140 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 316 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 206 bp overlap
NR0B1 1 dataset
ChIP NCI-H460 GSE89569.NR0B1.NCI-H460 321 bp overlap
NUTM1 2 datasets
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 433 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 222 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 265 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 503 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 694 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 614 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 414 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 279 bp overlap
Plagl1 1 dataset
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 136 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 697 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 708 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 497 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 506 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 169 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 175 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 103 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 333 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 604 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 568 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 535 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 506 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 622 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 502 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 424 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 306 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 534 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 329 bp overlap
SMARCA4 5 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 406 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 641 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 190 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 708 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 331 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 408 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 328 bp overlap
SMARCC1 6 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 372 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 498 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 537 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 638 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 447 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 583 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 346 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 574 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 156 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 341 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 308 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 599 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 341 bp overlap
Sox17 1 dataset
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 561 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 518 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 146 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 242 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 201 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 298 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 518 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 171 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 313 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 378 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 506 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 253 bp overlap
ZIC1 1 dataset
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZKSCAN5 1 dataset
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 109 bp overlap
ZNF24 2 datasets
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 243 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 462 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 235 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 196 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 295 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 534 bp overlap
ZNF667 1 dataset
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 188 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 294 bp overlap
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