chr1 : 236,348,047 236,348,714
667 bp 116 TFs 0 linked genes
This 667 bp open chromatin element has no linked target genes and is bound by 116 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:236,343,047 – 236,353,714
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
AGO1 5 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 376 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 461 bp overlap
ChIP HepG2 ENCFF277EOU 574 bp overlap
ChIP HepG2 ENCFF358CXO 572 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 239 bp overlap
AR 6 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 237 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.AR.LNCaP_FENG_shFOXA1_Ethanol 186 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 88 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 219 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 187 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 477 bp overlap
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 126 bp overlap
BRD3 3 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 408 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 210 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 141 bp overlap
BRD4 11 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 333 bp overlap
ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 324 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 313 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 378 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 227 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 182 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 203 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-744 155 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 192 bp overlap
ChIP hESC GSE33281.BRD4.hESC 72 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CBFB 2 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 476 bp overlap
ChIP SKNO-1 GSE23730.CBFB.SKNO-1 214 bp overlap
CBX1 2 datasets
ChIP K-562 ENCSR948QLZ.CBX1.K-562 469 bp overlap
ChIP K562 ENCFF008KGK 432 bp overlap
CBX3 1 dataset
ChIP K562 ENCFF410AQU 431 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 172 bp overlap
CHAMP1 3 datasets
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 485 bp overlap
ChIP K562 ENCFF860ZIW 455 bp overlap
ChIP K562 ENCFF860ZIW 457 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 171 bp overlap
CLOCK 1 dataset
Motif DE_12h DE_12h-CLOCK_MA0819.3 7 bp overlap
CTCF 9 datasets
ChIP Caco-2 ENCFF934QYS 181 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 191 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 351 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 433 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 393 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 578 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 244 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 331 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 58 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 250 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 84 bp overlap
ERG 4 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 127 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 275 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 450 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 467 bp overlap
ESR1 9 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 520 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 176 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 326 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 377 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 269 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 484 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 326 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 246 bp overlap
ChIP breast_tumor_Male_23 GSE104399.ESR1.breast_tumor_Male_23 254 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 189 bp overlap
ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 212 bp overlap
EZH2 2 datasets
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 184 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 341 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 485 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 158 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 411 bp overlap
GATA6 1 dataset
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 165 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 216 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 182 bp overlap
HES1 1 dataset
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
HES5 1 dataset
Motif DE_12h DE_12h-HES5_MA0821.2 10 bp overlap
HES6 1 dataset
Motif DE_12h DE_12h-HES6_MA1493.1 10 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 362 bp overlap
HEY1 1 dataset
Motif DE_12h DE_12h-HEY1_MA0823.1 10 bp overlap
HEY2 1 dataset
Motif DE_12h DE_12h-HEY2_MA0649.2 9 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 117 bp overlap
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 222 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 126 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 144 bp overlap
IRF4 1 dataset
ChIP OCI-Ly3 GSE56857.IRF4.OCI-Ly3 223 bp overlap
KDM4B 1 dataset
ChIP K-562 ENCSR642VZY.KDM4B.K-562 293 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 446 bp overlap
KDM5B 1 dataset
ChIP MCF-7 GSE46055.KDM5B.MCF-7 176 bp overlap
KDM6B 2 datasets
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 203 bp overlap
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 210 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 423 bp overlap
MAX 1 dataset
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 217 bp overlap
MLXIP 1 dataset
ChIP HeLa GSE125089.MLXIP.HeLa 267 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
Motif DE_12h DE_12h-MYC_MA0147.4 8 bp overlap
ChIP K-562 ENCSR000EZV.MYC.K-562 123 bp overlap
MYCN 1 dataset
Motif DE_12h DE_12h-MYCN_MA0104.5 8 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 588 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 174 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BJR.NR3C1.A-549 213 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 104 bp overlap
Npas2 1 dataset
Motif DE_12h DE_12h-Npas2_MA0626.2 8 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 606 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 596 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 559 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 589 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 347 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 260 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 429 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 391 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 662 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 303 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 170 bp overlap
RAD21 1 dataset
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 271 bp overlap
RBFOX2 3 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 78 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 441 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 305 bp overlap
RBM14 1 dataset
ChIP K-562 ENCSR423FCW.RBM14.K-562 153 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 61 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 208 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 512 bp overlap
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 330 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 563 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 627 bp overlap
RUNX1 4 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 173 bp overlap
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 135 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 173 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 135 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 471 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 243 bp overlap
ChIP K-562 ENCSR000EWI.SETDB1.K-562 557 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 266 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 573 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 393 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 418 bp overlap
STAT3 2 datasets
ChIP WA01 ERP004237.STAT3.WA01 152 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 294 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 313 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 281 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 211 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 577 bp overlap
TP53 1 dataset
ChIP Calu-1_WT-DMSO GSE128673.TP53.Calu-1_WT-DMSO 277 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
TRIM24 4 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 322 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 196 bp overlap
ChIP K562 ENCFF284DKY 343 bp overlap
ChIP K562 ENCFF616RIL 115 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 426 bp overlap
TRIM28 2 datasets
ChIP K-562 ENCSR474CVP.TRIM28.K-562 246 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 521 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 451 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 473 bp overlap
ZBTB33 3 datasets
ChIP K562 ENCFF427SDV 435 bp overlap
ChIP K562 ENCFF875HLX 622 bp overlap
ChIP K562 ENCFF911VPU 241 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 370 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 501 bp overlap
ZBTB7A 2 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 69 bp overlap
ChIP K562 ENCFF579ZGM 72 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 197 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 488 bp overlap
ZNF316 3 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 519 bp overlap
ChIP K562 ENCFF281INV 442 bp overlap
ChIP K562 ENCFF838QCD 312 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap