chr12 : 128,056,260 – 128,056,839
579 bp 130 TFs 0 linked genes
This 579 bp open chromatin element has no linked target genes and is bound by 130 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:128,051,260 – 128,061,839
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
130 transcription factors
Source
Cell type
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 206 bp overlap
BRD4 2 datasets
ChIP 402-91 GSE111253.BRD4.402-91 212 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CTCF 21 datasets
ChIP D54 ENCSR000DKN.CTCF.D54 273 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP H9 ENCFF152GTF 305 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 136 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 174 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP brain ENCFF685VRG 537 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 365 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 355 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 162 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 129 bp overlap
ChIP endodermal cell ENCFF471YCZ 324 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 423 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 328 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 532 bp overlap
ChIP neural cell ENCFF335ADI 422 bp overlap
ChIP neural progenitor cell ENCFF581WPG 443 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 126 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
E2F6 3 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 296 bp overlap
E2F7 1 dataset
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
ELK1::HOXA1 1 dataset
Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 579 bp overlap
ChIP neural cell ENCFF442QNK 356 bp overlap
ERF::FIGLA 2 datasets
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 336 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 390 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXO6 2 datasets
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GRHL2 2 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 110 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 148 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
Motif DE_36h DE_36h-MEIS2_MA0774.1 8 bp overlap
MEIS3 2 datasets
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
Motif DE_36h DE_36h-MEIS3_MA0775.2 7 bp overlap
MGA 2 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 5 datasets
ChIP H1 ENCFF747ZPQ 178 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 239 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 149 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 188 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 138 bp overlap
NFATC3 4 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 238 bp overlap
NR3C1 1 dataset
ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 53 bp overlap
Nfatc1 4 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 274 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 302 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 176 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 128 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Prdm4 2 datasets
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 223 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 579 bp overlap
ChIP neural cell ENCFF564MOT 488 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBPJ 4 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 579 bp overlap
ChIP neural cell ENCFF882LXX 389 bp overlap
RUNX3 2 datasets
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
Runx1 2 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 149 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 192 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 120 bp overlap
SIX2 2 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 143 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 150 bp overlap
SMC3 3 datasets
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 188 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 579 bp overlap
ChIP neural cell ENCFF795YGY 301 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 170 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
TRIM28 4 datasets
ChIP WA01 GSE78099.TRIM28.WA01 216 bp overlap
ChIP WIBR3 GSE84382.TRIM28.WIBR3 174 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 179 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 324 bp overlap
Tbx6 4 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 168 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 316 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 317 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 188 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif DE_36h DE_36h-ZNF184_MA2120.1 13 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF454 2 datasets
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif DE_36h DE_36h-ZNF454_MA1712.2 17 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
ZNF75A 2 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 2 datasets
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
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