chr12 : 69,896,564 69,897,047
483 bp 121 TFs 3 linked genes
This 483 bp open chromatin element is linked to RAB3IP, PRANCR, and CNOT2 and is bound by 121 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
RAB3IP 158.0 kb Distal Multiome
PRANCR 346.6 kb Distal Multiome+HiCAR
CNOT2 346.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:69,891,564 – 69,902,047
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
121 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast_tumor_Male_7 GSE104399.AR.breast_tumor_Male_7 270 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 478 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 415 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 350 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 362 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 387 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 283 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 314 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 361 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 289 bp overlap
BRD4 3 datasets
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 425 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 377 bp overlap
ChIP hESC GSE33281.BRD4.hESC 160 bp overlap
CBFB 2 datasets
ChIP WTC11 ENCFF113HIY 452 bp overlap
ChIP WTC11 ENCFF113HIY 217 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 101 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 331 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 185 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 335 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 184 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 237 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 307 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 203 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 410 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 244 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 353 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 438 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 417 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 261 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 262 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 262 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 207 bp overlap
ERF 1 dataset
Motif DE_12h DE_12h-ERF_MA0760.2 9 bp overlap
ESR1 3 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 406 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 250 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 325 bp overlap
ETS1 2 datasets
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
ChIP GM23338 ENCFF701IZH 377 bp overlap
ETS2 1 dataset
Motif DE_12h DE_12h-ETS2_MA1484.2 9 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 254 bp overlap
ChIP hESC GSE113817.EZH2.hESC 209 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 251 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 242 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 313 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 375 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 308 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 2 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 315 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 211 bp overlap
GATA6 5 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 296 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 391 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 355 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 379 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 465 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC2 5 datasets
ChIP H1 ENCFF353UJQ 287 bp overlap
ChIP H1 ENCFF353UJQ 229 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 359 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 255 bp overlap
HDAC6 1 dataset
ChIP WA01 ENCSR000ATQ.HDAC6.WA01 119 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Isl1 1 dataset
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 198 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 239 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 436 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 301 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 483 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 399 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 433 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 434 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 483 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 426 bp overlap
JUND 3 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 233 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 131 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 189 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFK 3 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
ChIP H1 ENCFF854XWE 97 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 355 bp overlap
MAX 4 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 258 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 306 bp overlap
ChIP WTC11 ENCFF223QFY 443 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 414 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 483 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYC 2 datasets
ChIP H1 ENCFF794ZJT 265 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 260 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94782.MYCN.Kelly 239 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 483 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 403 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 246 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 329 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 271 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 152 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 483 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 443 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 197 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 459 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 387 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 312 bp overlap
ChIP hESC GSE20650.NANOG.hESC 370 bp overlap
ChIP hESC GSE18292.NANOG.hESC 145 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 353 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 187 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 104 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 483 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP H1 ENCFF698ZAP 200 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 483 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 235 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 462 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 194 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 256 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 483 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 303 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 236 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 404 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 157 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 210 bp overlap
RXRA 2 datasets
ChIP H1 ENCFF570NHK 201 bp overlap
ChIP WA01 ENCSR000BJW.RXRA.WA01 195 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 483 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 153 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 301 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 431 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 373 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 293 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 418 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 242 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 395 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 257 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 337 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 372 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 289 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 382 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 207 bp overlap
ChIP hESC GSE29422.SMAD4.hESC 222 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 451 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 440 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 399 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 380 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 245 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 396 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 400 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 416 bp overlap
ChIP hESC GSE69479.SOX2.hESC 345 bp overlap
ChIP hESC GSE18292.SOX2.hESC 140 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 428 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 275 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 321 bp overlap
ChIP WTC11 ENCFF688PEU 437 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 134 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 321 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 314 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 434 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 168 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 279 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 305 bp overlap
TCF21 1 dataset
Motif ES_0h ES_0h-TCF21_MA1568.2 10 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 343 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 358 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 405 bp overlap
USF1 3 datasets
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 153 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 236 bp overlap
ChIP NT2/D1 ENCFF999MII 312 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 339 bp overlap
ZBTB43 2 datasets
ChIP WTC11 ENCFF058JUB 456 bp overlap
ChIP WTC11 ENCFF058JUB 254 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 311 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 479 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 341 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 303 bp overlap
ZNF138 2 datasets
ChIP WTC11 ENCFF800FUU 393 bp overlap
ChIP WTC11 ENCFF800FUU 189 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 386 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 285 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 333 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 452 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 421 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap