chr1 : 197,908,736 197,909,098
362 bp 95 TFs 2 linked genes
This 362 bp open chromatin element is linked to LHX9 and C1orf53 and is bound by 95 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LHX9 2.8 kb Proximal Proximity
C1orf53 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:197,903,736 – 197,914,098
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa GSE40632.AFF4.HeLa 70 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 197 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 204 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 322 bp overlap
BMI1 1 dataset
ChIP K-562 ENCSR782WRO.BMI1.K-562 55 bp overlap
BRD2 4 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 362 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 362 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 294 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 325 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 299 bp overlap
BRD4 10 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 348 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 362 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 295 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 282 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 263 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 231 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 265 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 269 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 181 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 279 bp overlap
BRD7 2 datasets
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 210 bp overlap
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 253 bp overlap
CBX2 2 datasets
ChIP HEK293T GSE34774.CBX2.HEK293T 281 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 362 bp overlap
CBX7 2 datasets
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 362 bp overlap
ChIP lymphocyte_UNC4976 GSE110139.CBX7.lymphocyte_UNC4976 116 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 52 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 362 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE83777.CDK7.Jurkat 226 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 57 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 225 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 205 bp overlap
CTCF 25 datasets
ChIP AG10803 ENCFF549AQK 183 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 115 bp overlap
ChIP CUTLL1_GSI GSE130140.CTCF.CUTLL1_GSI 152 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 206 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 362 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 187 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 149 bp overlap
ChIP HEK293 ENCFF498RMM 245 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 203 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 197 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 83 bp overlap
ChIP MCF-7 ENCFF139NQI 240 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 84 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 145 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 166 bp overlap
ChIP endodermal cell ENCFF471YCZ 275 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 202 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 135 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 189 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 173 bp overlap
ChIP neural progenitor cell ENCFF420RBO 224 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 162 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 215 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 345 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 146 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF006PJY 97 bp overlap
ELF1 3 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 180 bp overlap
ChIP K562 ENCFF496AKI 221 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 362 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 216 bp overlap
ERG 3 datasets
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 223 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 283 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 135 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 314 bp overlap
ETS1 3 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 352 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 284 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 180 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 179 bp overlap
EZH2 20 datasets
ChIP A673 ENCFF955JRZ 309 bp overlap
ChIP B cell ENCFF803EMO 155 bp overlap
ChIP GM23248 ENCFF506FWX 277 bp overlap
ChIP GM23338 ENCFF613YON 351 bp overlap
ChIP GM23338 ENCFF613YON 101 bp overlap
ChIP H1 ENCFF232NZA 362 bp overlap
ChIP OCI-LY7 ENCFF395KPU 362 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 177 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 216 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 362 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 362 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 362 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 152 bp overlap
ChIP hepatocyte ENCFF552DZB 339 bp overlap
ChIP keratinocyte ENCFF070STK 362 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 290 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 119 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 270 bp overlap
ChIP neural progenitor cell ENCFF018MKA 362 bp overlap
ChIP neural progenitor cell ENCFF472NFV 362 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 238 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 355 bp overlap
ChIP HEK293 ENCFF299RSE 156 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 285 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 233 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 239 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 78 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 321 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 142 bp overlap
KMT2A 7 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 276 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 362 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 326 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 180 bp overlap
ChIP MCF-7_C-term_TTP22 GSE90762.KMT2A.MCF-7_C-term_TTP22 196 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 188 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 170 bp overlap
KMT2B 1 dataset
ChIP HEK293T_C-term_C104 GSE90762.KMT2B.HEK293T_C-term_C104 233 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCFF994GSG 362 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 203 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 362 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 310 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 146 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 231 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 134 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 309 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 319 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 362 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 362 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 313 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 189 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 219 bp overlap
RAD21 4 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 230 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 308 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 201 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 143 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 103 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 74 bp overlap
ChIP H1 ENCFF239FFS 362 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 119 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 225 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 362 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 206 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 197 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 230 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 293 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 300 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 242 bp overlap
SMARCA4 7 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 362 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 342 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 321 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 362 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 325 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 305 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 274 bp overlap
SMARCC1 3 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 107 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 203 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 301 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 124 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 163 bp overlap
SPI1 5 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 268 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 328 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 362 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 277 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 113 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 252 bp overlap
STAT3 2 datasets
ChIP SUM159PT GSE152203.STAT3.SUM159PT 255 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 216 bp overlap
SUZ12 5 datasets
ChIP H1 ENCFF507HGF 253 bp overlap
ChIP H1 ENCFF881NFR 362 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 268 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 362 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 357 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 317 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 285 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 232 bp overlap
TCF7L2 6 datasets
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 266 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 306 bp overlap
ChIP MCF-7 ENCFF219LIX 362 bp overlap
ChIP MCF-7 ENCFF219LIX 187 bp overlap
ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 320 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 230 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 85 bp overlap
TEAD4 2 datasets
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 362 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 155 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 158 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 362 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 347 bp overlap
ZBTB11 2 datasets
ChIP HEK293 ENCFF262GZJ 362 bp overlap
ChIP HEK293 ENCSR882ZTS.ZBTB11.HEK293 242 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 362 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 178 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 256 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 224 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 302 bp overlap
ChIP K562 ENCFF255RZG 136 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 339 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 292 bp overlap
ZNF257 4 datasets
ChIP HEK293 GSE76494.ZNF257.HEK293 251 bp overlap
ChIP HEK293T GSE78099.ZNF257.HEK293T 334 bp overlap
ChIP K-562 ENCSR492FKD.ZNF257.K-562 225 bp overlap
ChIP K562 ENCFF849YZP 136 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 257 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 295 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 147 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 131 bp overlap
ZNF320 2 datasets
ChIP HEK293 GSE76494.ZNF320.HEK293 154 bp overlap
ChIP HEK293T GSE78099.ZNF320.HEK293T 100 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 362 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 362 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 253 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 362 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 362 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 362 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 227 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 298 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 240 bp overlap