chr9:137,723,975–137,724,439

chr9 : 137,723,975 – 137,724,439

464 bp 115 TFs 8 linked genes

This 464 bp open chromatin element is linked to 8 target genes and is bound by 115 transcription factors.

Linked Genes

8 genes

Gene	Expression	Dist. to TSS	Distance	Link type
EHMT1		105.2 kb	Distal	Multiome
ARRDC1-AS1		105.4 kb	Distal	Multiome
ARRDC1		118.5 kb	Distal	Multiome
ZMYND19		133.7 kb	Distal	Multiome
DPH7		145.3 kb	Distal	Multiome
CACNA1B		153.6 kb	Distal	Multiome
MRPL41		172.3 kb	Distal	Multiome
NSMF		264.9 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

115 transcription factors

ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 382 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 301 bp overlap

ChIP K-562 ENCSR028UIU.ATF3.K-562 347 bp overlap

Motif DE_24h DE_24h-Atf3_MA1988.2 7 bp overlap

BACH1 2 datasets

Motif DE_24h DE_24h-BACH1_MA1633.2 9 bp overlap

ChIP WA01 ENCSR000EBQ.BACH1.WA01 172 bp overlap

BACH2 1 dataset

Motif DE_24h DE_24h-BACH2_MA1101.3 11 bp overlap

Motif DE_24h DE_24h-BATF_MA1634.2 7 bp overlap

BATF3 1 dataset

Motif DE_24h DE_24h-BATF3_MA0835.3 7 bp overlap

BATF::JUN 1 dataset

Motif DE_24h DE_24h-BATFJUN_MA0462.3 7 bp overlap

BCL3 2 datasets

ChIP GM12878 ENCFF854PAY 351 bp overlap

ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 205 bp overlap

Motif DE_24h DE_24h-BNC2_MA1928.2 7 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 188 bp overlap

BRD3 2 datasets

ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 195 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 384 bp overlap

BRD4 12 datasets

ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 464 bp overlap

ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 291 bp overlap

ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 464 bp overlap

ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 464 bp overlap

ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 222 bp overlap

ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 464 bp overlap

ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 68 bp overlap

ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 201 bp overlap

ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 243 bp overlap

ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 142 bp overlap

ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 144 bp overlap

ChIP hESC GSE33281.BRD4.hESC 94 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 219 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 176 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 141 bp overlap

CLOCK 1 dataset

ChIP BA40_3 GSE96659.CLOCK.BA40_3 150 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 298 bp overlap

ChIP islet ERP004003.CTCF.islet 160 bp overlap

ChIP K-562 ENCSR219BXP.DPF2.K-562 214 bp overlap

EGR1 11 datasets

ChIP H1 ENCFF451BLH 261 bp overlap

ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 189 bp overlap

ChIP K-562 ENCSR024CNP.EGR1.K-562 344 bp overlap

ChIP K-562 ENCSR211LTF.EGR1.K-562 287 bp overlap

ChIP K-562 ENCSR000BNE.EGR1.K-562 208 bp overlap

ChIP K562 ENCFF006PJY 245 bp overlap

ChIP K562 ENCFF113OPQ 367 bp overlap

ChIP K562 ENCFF895KGN 157 bp overlap

ChIP WA01 ENCSR000BJA.EGR1.WA01 173 bp overlap

ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 272 bp overlap

ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 257 bp overlap

ChIP GM12878 ENCSR000BMB.ELF1.GM12878 147 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 312 bp overlap

ChIP MCF-7 GSE23730.ERG.MCF-7 206 bp overlap

Motif DE_24h DE_24h-FOS_MA0476.2 8 bp overlap

ChIP K-562 ENCSR000DKB.FOS.K-562 203 bp overlap

FOS::JUN 1 dataset

Motif DE_24h DE_24h-FOSJUN_MA0099.4 9 bp overlap

FOS::JUNB 1 dataset

Motif DE_24h DE_24h-FOSJUNB_MA1134.2 9 bp overlap

FOS::JUND 1 dataset

Motif DE_24h DE_24h-FOSJUND_MA1141.2 9 bp overlap

FOSB::JUNB 1 dataset

Motif DE_24h DE_24h-FOSBJUNB_MA1135.2 9 bp overlap

FOSL1 3 datasets

Motif DE_24h DE_24h-FOSL1_MA0477.3 9 bp overlap

ChIP K-562 ENCSR000BMV.FOSL1.K-562 167 bp overlap

ChIP K562 ENCFF728OTE 231 bp overlap

FOSL1::JUN 1 dataset

Motif DE_24h DE_24h-FOSL1JUN_MA1128.2 9 bp overlap

FOSL1::JUNB 1 dataset

Motif DE_24h DE_24h-FOSL1JUNB_MA1137.2 9 bp overlap

FOSL1::JUND 1 dataset

Motif DE_24h DE_24h-FOSL1JUND_MA1142.2 8 bp overlap

FOSL2 1 dataset

Motif DE_24h DE_24h-FOSL2_MA0478.2 10 bp overlap

FOSL2::JUN 1 dataset

Motif DE_24h DE_24h-FOSL2JUN_MA1130.2 9 bp overlap

FOSL2::JUNB 1 dataset

Motif DE_24h DE_24h-FOSL2JUNB_MA1138.2 9 bp overlap

FOSL2::JUND 1 dataset

Motif DE_24h DE_24h-FOSL2JUND_MA1144.2 9 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 254 bp overlap

GABPA 1 dataset

ChIP WA01 ENCSR000BIW.GABPA.WA01 158 bp overlap

GLIS1 2 datasets

ChIP HEK293 ENCFF299RSE 363 bp overlap

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 464 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 464 bp overlap

HDAC2 3 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 257 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 266 bp overlap

Motif DE_24h DE_24h-ISL2_MA0914.2 6 bp overlap

Motif DE_24h DE_24h-JDP2_MA0655.1 9 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 434 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 440 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 464 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 416 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 341 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 384 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 454 bp overlap

JUN::JUNB 1 dataset

Motif DE_24h DE_24h-JUNJUNB_MA1132.2 8 bp overlap

JUNB 2 datasets

ChIP CD4 GSE116695.JUNB.CD4 296 bp overlap

Motif DE_24h DE_24h-JUNB_MA0490.3 9 bp overlap

JUND 5 datasets

Motif DE_24h DE_24h-JUND_MA0491.3 9 bp overlap

ChIP H1 ENCFF010YXS 311 bp overlap

ChIP H1 ENCFF468JZD 231 bp overlap

ChIP WA01 ENCSR000EBZ.JUND.WA01 326 bp overlap

ChIP WA01 ENCSR000BKP.JUND.WA01 185 bp overlap

Motif DE_24h DE_24h-Jun_MA0489.3 8 bp overlap

KDM5B 2 datasets

ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 150 bp overlap

ChIP T-47D GSE46055.KDM5B.T-47D 155 bp overlap

KLF1 3 datasets

ChIP HEK293 ENCFF159QSW 307 bp overlap

ChIP HEK293 ENCSR859BMR.KLF1.HEK293 348 bp overlap

ChIP HEK293 GSE76494.KLF1.HEK293 280 bp overlap

KLF14 1 dataset

ChIP HEK293 ENCSR780ESQ.KLF14.HEK293 341 bp overlap

KLF17 1 dataset

ChIP HEK293 ENCSR065WUF.KLF17.HEK293 418 bp overlap

ChIP keratinocyte GSE140991.KLF3.keratinocyte 238 bp overlap

KLF4 2 datasets

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 158 bp overlap

ChIP WIBR3 GSE130417.KLF4.WIBR3 86 bp overlap

ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 157 bp overlap

KMT2D 1 dataset

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 267 bp overlap

Motif DE_24h DE_24h-MAFK_MA0496.4 10 bp overlap

ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 329 bp overlap

MED1 2 datasets

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 413 bp overlap

ChIP VCaP GSE148358.MED1.VCaP 208 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 207 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 272 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 255 bp overlap

ChIP hESC GSE18292.NANOG.hESC 93 bp overlap

NELFE 1 dataset

ChIP HeLa GSE125534.NELFE.HeLa 148 bp overlap

NFATC1 1 dataset

ChIP GM12878 ENCSR000BQL.NFATC1.GM12878 192 bp overlap

NFE2 2 datasets

Motif DE_24h DE_24h-NFE2_MA0841.2 10 bp overlap

ChIP ProEs GSE59087.NFE2.ProEs 96 bp overlap

NFKB1 1 dataset

ChIP HEK293T GSE129618.NFKB1.HEK293T 356 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 275 bp overlap

POU5F1 3 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 370 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 464 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 237 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 359 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 197 bp overlap

RAD21 1 dataset

ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 241 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 191 bp overlap

ChIP CD4 GSE49570.REST.CD4 222 bp overlap

RUNX1 1 dataset

ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 92 bp overlap

RUNX2 1 dataset

ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 150 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 336 bp overlap

Motif DE_24h DE_24h-Rfx6_MA1724.2 9 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 123 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 361 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 408 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 266 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 347 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 331 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 328 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 264 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 368 bp overlap

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP HEK293 GSE76494.SP1.HEK293 214 bp overlap

ChIP HEK293T ERP007114.SP1.HEK293T 346 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 145 bp overlap

ChIP WTC11 ENCFF688PEU 426 bp overlap

ChIP HEK293 GSE76494.SP2.HEK293 195 bp overlap

ChIP HEK293 GSE76494.SP4.HEK293 296 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 131 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 236 bp overlap

SREBP2 1 dataset

ChIP HCC70 GSE126380.SREBP2.HCC70 263 bp overlap

STAT5A 1 dataset

ChIP GM12878 ENCSR000BQZ.STAT5A.GM12878 128 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 384 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 294 bp overlap

ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 283 bp overlap

TBX21 1 dataset

ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 106 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 154 bp overlap

ChIP NPC GSE154479.TCF3.NPC 319 bp overlap

TFAP2C 2 datasets

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 379 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 422 bp overlap

TRIM24 1 dataset

ChIP K-562 ENCSR907MZR.TRIM24.K-562 226 bp overlap

TRIM28 2 datasets

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap

ChIP hESC GSE115387.TRIM28.hESC 262 bp overlap

YY1AP1 1 dataset

ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 172 bp overlap

ZBTB43 2 datasets

ChIP WTC11 ENCFF058JUB 250 bp overlap

ChIP WTC11 ENCFF058JUB 424 bp overlap

ZBTB6 1 dataset

Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap

ZFHX2 1 dataset

ChIP HEK293 ENCFF167TUA 346 bp overlap

ChIP HEK293 ENCFF033NQQ 464 bp overlap

ZKSCAN1 4 datasets

Motif DE_24h DE_24h-ZKSCAN1_MA1585.2 9 bp overlap

ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 170 bp overlap

ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 368 bp overlap

ChIP K562 ENCFF977CBA 357 bp overlap

ZNF143 1 dataset

ChIP WA01 ENCSR000EBW.ZNF143.WA01 96 bp overlap

ZNF148 1 dataset

ChIP K-562 GSE121133.ZNF148.K-562 321 bp overlap

ZNF273 1 dataset

ChIP HEK293T GSE78099.ZNF273.HEK293T 309 bp overlap

ZNF281 1 dataset

ChIP K-562 GSE121133.ZNF281.K-562 369 bp overlap

ZNF341 1 dataset

ChIP HEK293 GSE76494.ZNF341.HEK293 161 bp overlap

ZNF398 1 dataset

ChIP BG01V GSE133630.ZNF398.BG01V 221 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 107 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap

ZNF605 1 dataset

ChIP HEK293T GSE78099.ZNF605.HEK293T 241 bp overlap

Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap