chr9 : 81,665,404 81,665,887
483 bp 133 TFs 0 linked genes
This 483 bp open chromatin element has no linked target genes and is bound by 133 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:81,660,404 – 81,670,887
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
133 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 285 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 457 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 248 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 297 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 466 bp overlap
BRD4 13 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 258 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 203 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 405 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 203 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 348 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 483 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 238 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 483 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 204 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 483 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 266 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 332 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 271 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 422 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 373 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 186 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 251 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 426 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 202 bp overlap
EP300 3 datasets
ChIP hESC GSE17917.EP300.hESC 293 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 411 bp overlap
ChIP neural cell ENCFF442QNK 459 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 283 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 164 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 240 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 396 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 265 bp overlap
FLI1 2 datasets
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 268 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 252 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 398 bp overlap
ChIP DE DE-FOXA2-2 260 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 157 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 305 bp overlap
GATA2 2 datasets
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 250 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 185 bp overlap
GATA3 1 dataset
ChIP BE2C GSE65664.GATA3.BE2C 158 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 371 bp overlap
ChIP DE DE-GATA4-2 381 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 366 bp overlap
ChIP foregut GSE117136.GATA4.foregut 265 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 415 bp overlap
ChIP DE DE-GATA6-2 396 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 251 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 225 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 371 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 283 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 246 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 274 bp overlap
ChIP foregut GSE117136.GATA6.foregut 346 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 294 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 284 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 289 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 342 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 317 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA6 1 dataset
Motif ES_0h ES_0h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif ES_0h ES_0h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif ES_0h ES_0h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif ES_0h ES_0h-HOXB8_MA1502.2 7 bp overlap
HOXD3 1 dataset
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif ES_0h ES_0h-HOXD8_MA0910.3 7 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 458 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 142 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCFF326EGX 431 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 210 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 291 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 209 bp overlap
MED1 2 datasets
ChIP SGBS GSE64233.MED1.SGBS 307 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 163 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 302 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 183 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 247 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 367 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 229 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 380 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 277 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 274 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 483 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 483 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 266 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 483 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 448 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 334 bp overlap
ChIP hESC GSE20650.NANOG.hESC 281 bp overlap
ChIP hESC GSE18292.NANOG.hESC 214 bp overlap
NKX2-1 2 datasets
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 467 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 304 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 242 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 244 bp overlap
Nfe2l2 1 dataset
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 478 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 207 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 396 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 335 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 375 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 197 bp overlap
PRDM1 1 dataset
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 345 bp overlap
Prdm5 1 dataset
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RAD21 6 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 373 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 290 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 248 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 168 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 483 bp overlap
ChIP neural cell ENCFF564MOT 434 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 237 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RBPJ 3 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 483 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 402 bp overlap
ChIP MUTUL GSE75503.RBPJ.MUTUL 161 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 192 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 186 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 199 bp overlap
RFX7 1 dataset
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 221 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 393 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 157 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 483 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 278 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 483 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 311 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 475 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 293 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 375 bp overlap
ChIP neural cell ENCFF795YGY 419 bp overlap
SOX10 2 datasets
ChIP 501-mel GSE61965.SOX10.501-mel 235 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 387 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 443 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 187 bp overlap
ChIP hESC GSE18292.SOX2.hESC 165 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 482 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 409 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 243 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 147 bp overlap
SP7 3 datasets
ChIP HEK293 ENCFF733RBE 213 bp overlap
ChIP HEK293 ENCFF733RBE 229 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 313 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 145 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 88 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
TCF7 1 dataset
Motif ES_0h ES_0h-TCF7_MA0769.3 7 bp overlap
TCF7L2 2 datasets
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
ChIP HEK293 ENCFF513JQN 451 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 404 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 154 bp overlap
ChIP BE2C GSE84389.TEAD4.BE2C 82 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 154 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 82 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF582MWI 483 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 263 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 417 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 126 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 126 bp overlap
USP7 1 dataset
ChIP HEK293T GSE61048.USP7.HEK293T 307 bp overlap
VENTX 1 dataset
Motif ES_0h ES_0h-VENTX_MA0724.1 9 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 197 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 384 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 204 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 478 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 483 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 456 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 454 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 238 bp overlap
ZFP69B 2 datasets
ChIP HEK293 ENCFF942LFP 352 bp overlap
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 310 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 315 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 196 bp overlap
ZNF384 1 dataset
ChIP HEK293T ENCFF019DZX 229 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 203 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 184 bp overlap
ZNF692 3 datasets
Motif ES_0h ES_0h-ZNF692_MA1986.2 8 bp overlap
ChIP HEK293 ENCFF040AZE 329 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 406 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 375 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 258 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 314 bp overlap