chr7 : 47,573,047 47,573,300
253 bp 111 TFs 1 linked gene
This 253 bp open chromatin element is linked to TNS3 and is bound by 111 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
TNS3 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:47,568,047 – 47,578,300
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 239 bp overlap
ARID4A 2 datasets
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 253 bp overlap
ChIP HepG2 ENCFF142DIE 87 bp overlap
ARNTL 1 dataset
ChIP Hep-G2 ENCSR794LVK.ARNTL.Hep-G2 214 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 253 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 176 bp overlap
ATF3 2 datasets
ChIP Hep-G2 ENCSR000BKE.ATF3.Hep-G2 102 bp overlap
ChIP WA01 ENCSR000BKC.ATF3.WA01 112 bp overlap
ATF7,NPFF 1 dataset
ChIP HepG2 ENCFF068SVI 253 bp overlap
ATOH8 2 datasets
ChIP A-549 ENCSR161CZA.ATOH8.A-549 126 bp overlap
ChIP A549 ENCFF772HNB 136 bp overlap
BCL11A 1 dataset
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 82 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 97 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 238 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 181 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 118 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 79 bp overlap
BRD3 1 dataset
ChIP THP-1_DMSO-PMA GSE138084.BRD3.THP-1_DMSO-PMA 224 bp overlap
BRD4 4 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 187 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 253 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 199 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 103 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 135 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 214 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 197 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 141 bp overlap
CTCF 4 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 95 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 253 bp overlap
ChIP body of pancreas ENCFF438KTE 253 bp overlap
ChIP body of pancreas ENCFF881RGF 62 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 81 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 110 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 253 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 163 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 253 bp overlap
EHF 1 dataset
ChIP A549 ENCFF352AOI 247 bp overlap
EP300 1 dataset
ChIP A-549 ENCSR000BPW.EP300.A-549 112 bp overlap
FOSB 1 dataset
ChIP A-549 ENCSR918GHT.FOSB.A-549 188 bp overlap
FOSL1 1 dataset
ChIP MNNG-HOS GSE74230.FOSL1.MNNG-HOS 59 bp overlap
FOXF2 1 dataset
ChIP A-549 ENCSR445FHB.FOXF2.A-549 165 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 116 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 143 bp overlap
HNF1A 1 dataset
ChIP HepG2 ENCFF540TRC 253 bp overlap
HNF4A 4 datasets
ChIP HepG2 ENCFF146SSF 253 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 202 bp overlap
ChIP liver ERP002306.HNF4A.liver 50 bp overlap
HNRNPL 1 dataset
ChIP HepG2 ENCFF684GAM 253 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 123 bp overlap
HOXA7 1 dataset
ChIP A-549 ENCSR402OYZ.HOXA7.A-549 253 bp overlap
HOXB5 2 datasets
ChIP A-549 ENCSR748HJZ.HOXB5.A-549 123 bp overlap
ChIP A549 ENCFF891VDO 113 bp overlap
IKZF5 1 dataset
ChIP HepG2 ENCFF641EBK 253 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 198 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 151 bp overlap
JUND 1 dataset
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 56 bp overlap
KDM5B 1 dataset
ChIP HepG2 ENCFF706LUI 253 bp overlap
KLF4 3 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 128 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 253 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 236 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 249 bp overlap
MAX 16 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 187 bp overlap
ChIP A-549 ENCSR000DYG.MAX.A-549 82 bp overlap
ChIP A549 ENCFF310XGQ 156 bp overlap
ChIP A549 ENCFF985GDG 157 bp overlap
ChIP H1 ENCFF914VQY 95 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 230 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 122 bp overlap
ChIP Hep-G2 ENCSR000EDS.MAX.Hep-G2 100 bp overlap
ChIP HepG2 ENCFF102SKR 158 bp overlap
ChIP HepG2 ENCFF479OHI 253 bp overlap
ChIP HepG2 ENCFF507HCX 158 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 157 bp overlap
ChIP liver ENCFF092GVW 253 bp overlap
ChIP liver ENCFF584QGB 253 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 210 bp overlap
ChIP liver ENCSR521IID.MAX.liver 138 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 154 bp overlap
MGA 2 datasets
ChIP A-549_empty GSE112188.MGA.A-549_empty 170 bp overlap
ChIP HepG2 ENCFF057YJE 253 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 180 bp overlap
ChIP HepG2 ENCFF701PYP 58 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 106 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 253 bp overlap
MYC 1 dataset
ChIP HepG2 ENCFF575FXK 253 bp overlap
MYCN 4 datasets
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 140 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 96 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 77 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 140 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 200 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 253 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 159 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 194 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 253 bp overlap
NR2E3 1 dataset
ChIP A549 ENCFF833WDR 231 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 51 bp overlap
NR5A2 1 dataset
ChIP A-549 ENCSR190GIW.NR5A2.A-549 253 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 218 bp overlap
PBX1 1 dataset
ChIP A-549 ENCSR637RKG.PBX1.A-549 253 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 253 bp overlap
POLR2A 2 datasets
ChIP Panc1 ENCFF290KAB 253 bp overlap
ChIP stomach ENCFF820WZN 253 bp overlap
POU5F1 6 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 114 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 253 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 253 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 253 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 253 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 167 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 253 bp overlap
PRDM1 2 datasets
ChIP A-549 ENCSR977FEF.PRDM1.A-549 237 bp overlap
ChIP A549 ENCFF012KDW 180 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 207 bp overlap
ChIP MDM_IFNb GSE103477.RAD21.MDM_IFNb 166 bp overlap
ChIP liver ENCFF522JHE 165 bp overlap
RARA 2 datasets
ChIP HepG2 ENCFF582XUA 189 bp overlap
ChIP HepG2 ENCFF582XUA 218 bp overlap
REST 1 dataset
ChIP A-549 ENCSR000BQP.REST.A-549 253 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 100 bp overlap
SIN3A 3 datasets
ChIP A-549 ENCSR513XQX.SIN3A.A-549 253 bp overlap
ChIP A-549 ENCSR000BRM.SIN3A.A-549 165 bp overlap
ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 78 bp overlap
SMAD3 2 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 193 bp overlap
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 84 bp overlap
SMARCA4 2 datasets
ChIP NCI-H1703 GSE121755.SMARCA4.NCI-H1703 187 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 253 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 253 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 169 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 176 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 122 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF7L2 2 datasets
ChIP HepG2 ENCFF510OLG 243 bp overlap
ChIP Panc1 ENCFF829HHL 74 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 181 bp overlap
TFCP2L1 1 dataset
ChIP A549 ENCFF393VBT 179 bp overlap
TFE3 3 datasets
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 125 bp overlap
ChIP HepG2 ENCFF268PFH 183 bp overlap
ChIP HepG2 ENCFF268PFH 215 bp overlap
U2AF1 2 datasets
ChIP Hep-G2 ENCSR868JLS.U2AF1.Hep-G2 95 bp overlap
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 73 bp overlap
USF1 11 datasets
ChIP A-549 ENCSR000BJB.USF1.A-549 132 bp overlap
ChIP A-549 ENCSR000BPV.USF1.A-549 126 bp overlap
ChIP A-549 ENCSR000BHX.USF1.A-549 99 bp overlap
ChIP H1 ENCFF090WVU 86 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 134 bp overlap
ChIP HepG2 ENCFF201JKA 142 bp overlap
ChIP HepG2 ENCFF807KYJ 95 bp overlap
ChIP Ishikawa ENCFF728IEG 145 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 88 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 181 bp overlap
ChIP WTC11 ENCFF699QGS 213 bp overlap
USF2 11 datasets
ChIP A-549 ENCSR563FBT.USF2.A-549 250 bp overlap
ChIP A549 ENCFF343KII 192 bp overlap
ChIP H1 ENCFF434EDF 157 bp overlap
ChIP Hep-G2 ENCSR145QNL.USF2.Hep-G2 211 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 253 bp overlap
ChIP Hep-G2 ENCSR000EEF.USF2.Hep-G2 71 bp overlap
ChIP HepG2 ENCFF433IUE 253 bp overlap
ChIP HepG2 ENCFF671JRC 147 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 72 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 121 bp overlap
ChIP WTC11 ENCFF139JAW 228 bp overlap
ZC3H10 1 dataset
ChIP SK-N-SH ENCFF465WAR 150 bp overlap
ZFP37 1 dataset
ChIP HepG2 ENCFF721ZAA 187 bp overlap
ZFY 2 datasets
ChIP HepG2 ENCFF106ELT 253 bp overlap
ChIP HepG2 ENCFF106ELT 106 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 248 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 175 bp overlap
ZNF607 1 dataset
ChIP HepG2 ENCFF118ANP 198 bp overlap
ZNF609 2 datasets
ChIP Hep-G2 ENCSR407BPU.ZNF609.Hep-G2 126 bp overlap
ChIP HepG2 ENCFF900FRP 253 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 253 bp overlap
ChIP HepG2 ENCFF653WIX 253 bp overlap
ZNF697 1 dataset
ChIP HepG2 ENCFF153LJW 194 bp overlap