chr6 : 139,479,537 – 139,480,038
501 bp 137 TFs 1 linked gene
This 501 bp open chromatin element is linked to LINC01625 and is bound by 137 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01625 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:139,474,537 – 139,485,038
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
137 transcription factors
Source
Cell type
ARNT2 1 dataset
ChIP HepG2 ENCFF940DGN 210 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 50 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 165 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BRD3 3 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 181 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 319 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 246 bp overlap
BRD4 5 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 412 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 383 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 437 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 199 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 108 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 268 bp overlap
DBP 1 dataset
Motif DE_12h DE_12h-DBP_MA0639.2 10 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DNMT3B 1 dataset
ChIP HepG2 ENCFF341GEA 182 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
EHMT2 2 datasets
ChIP K-562 ENCSR175EOM.EHMT2.K-562 169 bp overlap
ChIP K562 ENCFF053BWO 249 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 136 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 253 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA1 20 datasets
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 198 bp overlap
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP HepG2 ENCFF207NVJ 173 bp overlap
ChIP HepG2 ENCFF361KNY 257 bp overlap
ChIP HepG2 ENCFF740VZW 78 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 268 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 263 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 212 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 157 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 184 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 184 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 116 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 187 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 146 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 501 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 237 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 212 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 191 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 202 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 250 bp overlap
FOXA2 8 datasets
ChIP DE DE-FOXA2-1 350 bp overlap
ChIP DE DE-FOXA2-2 311 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
ChIP HepG2 ENCFF533COJ 138 bp overlap
ChIP HepG2 ENCFF570ABM 231 bp overlap
ChIP HepG2 ENCFF894AYY 319 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 301 bp overlap
FOXA3 4 datasets
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
ChIP HepG2 ENCFF005KGL 256 bp overlap
ChIP HepG2 ENCFF005KGL 361 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 171 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 2 datasets
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 2 datasets
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 160 bp overlap
FOXK2 3 datasets
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
ChIP K-562 ENCSR302AWT.FOXK2.K-562 254 bp overlap
ChIP K562 ENCFF245WKP 327 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 166 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 3 datasets
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 191 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 3 datasets
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 187 bp overlap
FOXS1 2 datasets
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 2 datasets
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 232 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 259 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 271 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF679VBB 132 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 360 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 379 bp overlap
HLF 3 datasets
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF854JLR 213 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 161 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 147 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 237 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 257 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 177 bp overlap
ChIP K562 ENCFF320EQC 311 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAX 1 dataset
ChIP K562 ENCFF110LJS 210 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
ChIP K-562 ENCSR710WLO.MGA.K-562 112 bp overlap
ChIP K562 ENCFF140CEX 286 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 160 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 295 bp overlap
NCOA4 1 dataset
ChIP K562 ENCFF403UQZ 212 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NFRKB 2 datasets
ChIP K-562 ENCSR657EOF.NFRKB.K-562 61 bp overlap
ChIP K562 ENCFF057YFW 243 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 62 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 277 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 161 bp overlap
NR4A1 1 dataset
ChIP K-562 ENCSR130PDE.NR4A1.K-562 215 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF689EWI 425 bp overlap
Nkx2-1 1 dataset
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
ChIP HepG2 ENCFF723PFC 335 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 199 bp overlap
PGR 1 dataset
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
PHF20 1 dataset
ChIP HepG2 ENCFF609JBM 297 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 467 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 202 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 175 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 156 bp overlap
RBFOX2 1 dataset
ChIP K-562 GSE120104.RBFOX2.K-562 161 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 348 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 309 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 264 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 288 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 283 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 164 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 151 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 228 bp overlap
SMAD7 2 datasets
ChIP HepG2 ENCFF850FXR 398 bp overlap
ChIP HepG2 ENCFF850FXR 150 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 63 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 74 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 208 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 69 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
TEF 1 dataset
Motif DE_12h DE_12h-TEF_MA0843.2 10 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 140 bp overlap
TRIM24 1 dataset
ChIP K-562 ENCSR957LDM.TRIM24.K-562 232 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 389 bp overlap
TSHZ1 1 dataset
ChIP K562 ENCFF289XHG 118 bp overlap
USF1 1 dataset
ChIP K-562 ENCSR000BKT.USF1.K-562 60 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 436 bp overlap
ZNF148 3 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ChIP K562 ENCFF352SDL 412 bp overlap
ZNF175 1 dataset
ChIP K562 ENCFF497AEJ 99 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ChIP K562 ENCFF594VNM 406 bp overlap
ZNF449 1 dataset
ChIP K562 ENCFF038VEZ 143 bp overlap
ZNF501 2 datasets
ChIP HepG2 ENCFF879XZR 420 bp overlap
ChIP HepG2 ENCFF879XZR 202 bp overlap
ZNF512 1 dataset
ChIP HepG2 ENCFF113IGR 253 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 148 bp overlap
ZNF558 2 datasets
ChIP HEK293T GSE78099.ZNF558.HEK293T 371 bp overlap
ChIP HepG2 ENCFF210VCS 215 bp overlap
ZNF564 1 dataset
ChIP HepG2 ENCFF364ZIM 210 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 153 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
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