chr5 : 116,759,917 116,760,248
331 bp 123 TFs 0 linked genes
This 331 bp open chromatin element has no linked target genes and is bound by 123 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:116,754,917 – 116,765,248
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE117430.AR.LNCaP 190 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 331 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 232 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
ChIP H1 ENCFF282VDB 270 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 323 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 204 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 289 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD4 7 datasets
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 136 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 317 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 193 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 245 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 331 bp overlap
ChIP hESC GSE33281.BRD4.hESC 98 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 331 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 136 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 190 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 132 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 214 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 194 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 331 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 331 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 145 bp overlap
CTCF 1 dataset
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 219 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 149 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 206 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 308 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 294 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 248 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 242 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 286 bp overlap
ChIP DE DE-FOXA2-2 331 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 331 bp overlap
Foxn1 2 datasets
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 260 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 196 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 331 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 233 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 129 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 187 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 263 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 240 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 331 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 331 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 233 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 285 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 289 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 331 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 218 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 204 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 150 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 121 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 152 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 322 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 331 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 328 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 264 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 331 bp overlap
MRTFA 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFA.A-673-clone-Asp114 223 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 331 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 260 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 330 bp overlap
ChIP WTC11 ENCFF166TKT 331 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 290 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 224 bp overlap
MYOD1 5 datasets
ChIP RD GSE137168.MYOD1.RD 283 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 296 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 227 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 194 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 197 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 292 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 260 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 225 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 159 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 195 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 251 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 199 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 169 bp overlap
ChIP islet ERP001456.PDX1.islet 118 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 290 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF754JQR 308 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 188 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 231 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 197 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 134 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 156 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 296 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 217 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 300 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 288 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 213 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 301 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 154 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 178 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 101 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 233 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 296 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 217 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 144 bp overlap
SMARCA4 7 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 331 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 331 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 331 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 315 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 229 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 331 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 321 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 331 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 331 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 331 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 331 bp overlap
SNAI2 1 dataset
ChIP RD_shSNAI2 GSE137168.SNAI2.RD_shSNAI2 264 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 331 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 176 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 218 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 198 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 331 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 90 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 331 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 226 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 230 bp overlap
TAF2 1 dataset
ChIP hESC GSE17917.TAF2.hESC 120 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 331 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 222 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 161 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 170 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 215 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 184 bp overlap
YY1 4 datasets
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 152 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 264 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 174 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 211 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 331 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 249 bp overlap
ZNF343 1 dataset
ChIP HEK293T GSE78099.ZNF343.HEK293T 180 bp overlap
ZNF41 1 dataset
ChIP HEK293 GSE76494.ZNF41.HEK293 223 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 309 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF585B 1 dataset
ChIP HEK293 ENCFF657XIZ 144 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap