chr4 : 131,379,218 131,379,809
591 bp 109 TFs 1 linked gene
This 591 bp open chromatin element is linked to LINC02377 and is bound by 109 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02377 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:131,374,218 – 131,384,809
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 232 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 329 bp overlap
ChIP K562 ENCFF817JQF 519 bp overlap
BRD2 10 datasets
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 315 bp overlap
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 62 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 392 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 57 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 360 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 71 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 234 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 62 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD2.K-562_dilution-6-100 162 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 150 bp overlap
BRD4 3 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 73 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 286 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 369 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 96 bp overlap
CEBPB 2 datasets
ChIP MV4-11 GSE88746.CEBPB.MV4-11 230 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 90 bp overlap
CTCF 23 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 254 bp overlap
ChIP C4-2B ENCFF821XVN 591 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 270 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 150 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 138 bp overlap
ChIP K-562_15923 GSE131349.CTCF.K-562_15923 206 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 237 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 170 bp overlap
ChIP K-562_8004 GSE131349.CTCF.K-562_8004 120 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 99 bp overlap
ChIP K-562_CRISPRi_N4293 GSE131349.CTCF.K-562_CRISPRi_N4293 100 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 242 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 92 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 431 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 282 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 139 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 166 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 249 bp overlap
CTCFL 2 datasets
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
ChIP K-562 GSE70764.CTCFL.K-562 217 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 121 bp overlap
ChIP BLaER1 ENCFF364PUR 193 bp overlap
E2F3 1 dataset
ChIP K562 ENCFF922ILX 307 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
E2F8 1 dataset
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 272 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 147 bp overlap
ERF 1 dataset
ChIP K562 ENCFF626IQJ 285 bp overlap
ERG 6 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 372 bp overlap
ChIP K-562 GSE23730.ERG.K-562 262 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 231 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 316 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 216 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 240 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 203 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 211 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 160 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 159 bp overlap
EZH2 2 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 253 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 236 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FLI1 3 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 74 bp overlap
ChIP UAE GSE23730.FLI1.UAE 229 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 380 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 318 bp overlap
GABPA 2 datasets
ChIP K562 ENCFF139LXS 388 bp overlap
ChIP K562 ENCFF139LXS 188 bp overlap
GATA2 2 datasets
ChIP ME-1 GSE46044.GATA2.ME-1 314 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 462 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 327 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 98 bp overlap
HEXIM1 2 datasets
ChIP A-375_DMSO GSE68052.HEXIM1.A-375_DMSO 136 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 279 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HNRNPC 1 dataset
ChIP Hep-G2 GSE120104.HNRNPC.Hep-G2 186 bp overlap
HNRNPLL 4 datasets
ChIP K-562 GSE120104.HNRNPLL.K-562 335 bp overlap
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 322 bp overlap
ChIP K562 ENCFF541ZGX 179 bp overlap
ChIP K562 ENCFF598PWW 215 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 218 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 374 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 179 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 216 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 390 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 86 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 340 bp overlap
ChIP K562 ENCFF455EEO 215 bp overlap
MAZ 2 datasets
ChIP K-562 ENCSR163IUV.MAZ.K-562 140 bp overlap
ChIP K562 ENCFF982GSZ 460 bp overlap
NELFE 3 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 328 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 232 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 71 bp overlap
NFE2 4 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 287 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 184 bp overlap
ChIP K562 ENCFF047YKA 102 bp overlap
ChIP K562 ENCFF163BSI 265 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 364 bp overlap
NFYB 1 dataset
ChIP K-562 GSE26439.NFYB.K-562 307 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 415 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 406 bp overlap
NRF1 7 datasets
ChIP K-562 ENCSR494TDU.NRF1.K-562 437 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 388 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 232 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 97 bp overlap
ChIP K562 ENCFF689EWI 408 bp overlap
ChIP K562 ENCFF689EWI 428 bp overlap
ChIP K562 ENCFF791UHF 395 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 340 bp overlap
Nrf1 2 datasets
Motif DE_12h DE_12h-Nrf1_MA0506.3 12 bp overlap
Motif DE_12h DE_12h-Nrf1_MA0506.3 12 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 173 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 232 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 265 bp overlap
PHF8 1 dataset
ChIP K-562 ENCSR000AQH.PHF8.K-562 198 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 266 bp overlap
PLAGL2 1 dataset
Motif DE_12h DE_12h-PLAGL2_MA1548.2 8 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 381 bp overlap
ChIP K562 ENCFF648YPL 372 bp overlap
POU5F1 1 dataset
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 106 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 237 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP K562 ENCFF066JWO 405 bp overlap
ChIP K562 ENCFF634XYR 365 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 193 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 177 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 377 bp overlap
RBFOX2 4 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 431 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 431 bp overlap
ChIP K562 ENCFF196WTG 443 bp overlap
ChIP K562 ENCFF967GRF 458 bp overlap
REST 2 datasets
ChIP K-562 ENCSR137ZMQ.REST.K-562 204 bp overlap
ChIP K562 ENCFF688UKW 411 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 369 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 379 bp overlap
RUNX1 3 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 280 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 231 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 55 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 145 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 243 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 347 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 56 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 73 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 97 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 83 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP ME-1 GSE46044.SPI1.ME-1 247 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 366 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 287 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 393 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 211 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
ChIP ME-1 GSE46044.TCF12.ME-1 234 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 89 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 310 bp overlap
TFCP2 1 dataset
ChIP K562 ENCFF984WXL 331 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 280 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 151 bp overlap
TRIM24 2 datasets
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 360 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 208 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 374 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 174 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 444 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 376 bp overlap
ZBTB14 1 dataset
Motif DE_12h DE_12h-ZBTB14_MA1650.2 8 bp overlap
ZBTB17 1 dataset
ChIP K562 ENCFF731UTU 319 bp overlap
ZBTB7A 3 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 401 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 147 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 62 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 362 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 307 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap