chr3 : 190,855,249 190,855,858
609 bp 110 TFs 1 linked gene
This 609 bp open chromatin element is linked to GMNC and is bound by 110 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GMNC 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:190,850,249 – 190,860,858
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
ATF6 1 dataset
Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
BCOR 4 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 229 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 191 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 134 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 83 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 188 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 201 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 159 bp overlap
CREB3 1 dataset
Motif DE_12h DE_12h-CREB3_MA0638.2 12 bp overlap
CREB3L1 2 datasets
Motif DE_12h DE_12h-CREB3L1_MA0839.2 13 bp overlap
Motif DE_12h DE_12h-CREB3L1_MA0839.2 13 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 132 bp overlap
CTCF 71 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 257 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 206 bp overlap
ChIP A-549 ENCSR000DYD.CTCF.A-549 131 bp overlap
ChIP A549 ENCFF034FVO 276 bp overlap
ChIP Caco-2 ENCFF753NZV 236 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 116 bp overlap
ChIP GM23338 ENCFF531QOI 255 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 157 bp overlap
ChIP H9 ENCFF152GTF 281 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 235 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 209 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 318 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 236 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 155 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 201 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 233 bp overlap
ChIP HCT116 ENCFF003KHP 350 bp overlap
ChIP HCT116 ENCFF209YMI 263 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 134 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 127 bp overlap
ChIP HFFc6 ENCFF005CJI 377 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 234 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 173 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 160 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 202 bp overlap
ChIP Panc1 ENCFF056JQX 519 bp overlap
ChIP SK-N-SH ENCFF575DMG 357 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 221 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 286 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 128 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 424 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 284 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 270 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 167 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 118 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 172 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP endodermal cell ENCFF471YCZ 268 bp overlap
ChIP endothelial cell ENCFF663LIE 434 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 127 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 289 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 408 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 609 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 180 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 257 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 259 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 170 bp overlap
ChIP hESC GSE20650.CTCF.hESC 108 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 209 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 225 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 247 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 374 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 150 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 178 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 155 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 172 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 220 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 196 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 234 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 313 bp overlap
ChIP neural progenitor cell ENCFF420RBO 243 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 284 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 158 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 156 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 182 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 325 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 227 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 249 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 370 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 179 bp overlap
CUX1 1 dataset
Motif DE_12h DE_12h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_12h DE_12h-CUX2_MA0755.2 9 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF274GAT 252 bp overlap
ChIP BLaER1 ENCFF335XTP 254 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 159 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 210 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA1 5 datasets
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 70 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 122 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 123 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 129 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.FOXA1.T47D-A1-2_EtOH 190 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 338 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 371 bp overlap
ChIP foregut GSE117136.GATA6.foregut 276 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 162 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 207 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 207 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 97 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 272 bp overlap
PLAGL2 1 dataset
Motif DE_12h DE_12h-PLAGL2_MA1548.2 8 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 326 bp overlap
ChIP H1 ENCFF833NJP 208 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 184 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 354 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 158 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PROX1 1 dataset
Motif ES_0h ES_0h-PROX1_MA0794.1 12 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Prdm14 2 datasets
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 224 bp overlap
ChIP H1 ENCFF967OJF 212 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 233 bp overlap
RELB 1 dataset
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 145 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 397 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 397 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMARCA4 2 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 255 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 191 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 202 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 129 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 274 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 214 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 334 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 214 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 176 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 221 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 319 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 171 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 281 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 241 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 240 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
XBP1 1 dataset
Motif DE_12h DE_12h-XBP1_MA0844.2 11 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 164 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF331 3 datasets
ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 205 bp overlap
ChIP HEK293 GSE76494.ZNF331.HEK293 328 bp overlap
ChIP HEK293T GSE78099.ZNF331.HEK293T 280 bp overlap
ZNF410 2 datasets
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap