chr3 : 151,082,821 – 151,083,774
953 bp 105 TFs 1 linked gene
This 953 bp open chromatin element is linked to MED12L and is bound by 105 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MED12L 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:151,077,821 – 151,088,774
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ARNT::HIF1A 1 dataset
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 513 bp overlap
ATF2 1 dataset
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 70 bp overlap
ATF3 2 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 137 bp overlap
ChIP K562 ENCFF604FPV 197 bp overlap
ATF4 3 datasets
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 81 bp overlap
ChIP K-562 ENCSR145TSJ.ATF4.K-562 142 bp overlap
ATF7 2 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 86 bp overlap
ChIP MCF-7 ENCFF578WKB 140 bp overlap
Arnt 1 dataset
Motif DE_36h DE_36h-Arnt_MA0004.1 6 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 224 bp overlap
BRD4 1 dataset
ChIP NMC24335 GSE96775.BRD4.NMC24335 953 bp overlap
CEBPB 5 datasets
ChIP A549 ENCFF235AIY 57 bp overlap
ChIP H1 ENCFF871PTR 63 bp overlap
ChIP K562 ENCFF189VBN 82 bp overlap
ChIP MCF-7 ENCFF772ZTQ 98 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 134 bp overlap
CEBPG 2 datasets
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
ChIP K-562 ENCSR490LWA.CEBPG.K-562 93 bp overlap
CTCF 5 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 230 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 139 bp overlap
ChIP endodermal cell ENCFF471YCZ 223 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 272 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF335XTP 75 bp overlap
ChIP BLaER1 ENCFF680YXW 424 bp overlap
ChIP BLaER1 ENCFF844FIP 84 bp overlap
DMRTA2 1 dataset
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 252 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 765 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 76 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 77 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 863 bp overlap
ChIP DE DE-FOXA2-2 342 bp overlap
GATA3 3 datasets
ChIP MCF-7 ENCFF352QVM 350 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 270 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 214 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 670 bp overlap
ChIP DE DE-GATA4-2 899 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 236 bp overlap
ChIP foregut GSE117136.GATA4.foregut 479 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 225 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 708 bp overlap
ChIP DE DE-GATA6-2 913 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 845 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 861 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 783 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 334 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 450 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 896 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 863 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 592 bp overlap
ChIP foregut GSE117136.GATA6.foregut 296 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 314 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 636 bp overlap
HIF1A 1 dataset
ChIP RCC10 GSE101063.HIF1A.RCC10 297 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 210 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 481 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 382 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 333 bp overlap
JUN 5 datasets
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 348 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 411 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 330 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 276 bp overlap
JUND 3 datasets
Motif DE_36h DE_36h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 153 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 248 bp overlap
MAX 3 datasets
Motif DE_36h DE_36h-MAX_MA0058.4 6 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 139 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 194 bp overlap
MAX::MYC 1 dataset
Motif DE_36h DE_36h-MAXMYC_MA0059.2 10 bp overlap
MGA::EVX1 1 dataset
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
MNT 1 dataset
Motif DE_36h DE_36h-MNT_MA0825.2 6 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 472 bp overlap
MYC 1 dataset
Motif DE_36h DE_36h-MYC_MA0147.4 8 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 183 bp overlap
Motif DE_36h DE_36h-MYCN_MA0104.5 8 bp overlap
Mlxip 1 dataset
Motif DE_36h DE_36h-Mlxip_MA0622.2 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 487 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 209 bp overlap
NR2F1 1 dataset
Motif DE_36h DE_36h-NR2F1_MA1537.2 13 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 730 bp overlap
Nr2f6 1 dataset
Motif DE_36h DE_36h-Nr2f6_MA0677.2 13 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 402 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 429 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 54 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
PPARA::RXRA 1 dataset
Motif DE_36h DE_36h-PPARARXRA_MA1148.2 17 bp overlap
PPARD 1 dataset
Motif DE_36h DE_36h-PPARD_MA1550.2 14 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 212 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 596 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 221 bp overlap
PRDM9 1 dataset
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 1 dataset
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
Prdm15 1 dataset
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 452 bp overlap
ChIP neural cell ENCFF564MOT 505 bp overlap
RBPJ 1 dataset
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
RXRB 1 dataset
Motif DE_36h DE_36h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_36h DE_36h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_36h DE_36h-Rxra_MA0512.2 14 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 417 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 319 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 263 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 376 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 155 bp overlap
SMARCA4 1 dataset
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 363 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 477 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 179 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 431 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 246 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 288 bp overlap
SREBF1 2 datasets
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
SRF 2 datasets
ChIP H1 ENCFF036PEF 225 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 157 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 277 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TEAD1 1 dataset
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1574.2 13 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 237 bp overlap
ZBTB12 2 datasets
ChIP HEK293 ENCFF963HPT 331 bp overlap
ChIP HEK293 ENCSR543KOA.ZBTB12.HEK293 367 bp overlap
ZBTB32 1 dataset
Motif DE_36h DE_36h-ZBTB32_MA1580.1 10 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 158 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 530 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 534 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 97 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 134 bp overlap
ZNF101 1 dataset
ChIP HEK293 ENCSR462FWS.ZNF101.HEK293 243 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 501 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 475 bp overlap
ZNF320 1 dataset
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 343 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 144 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 281 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 97 bp overlap
ZNF675 1 dataset
Motif DE_36h DE_36h-ZNF675_MA1714.2 19 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF682 1 dataset
Motif DE_36h DE_36h-ZNF682_MA1599.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 170 bp overlap
ZSCAN21 1 dataset
Motif DE_36h DE_36h-ZSCAN21_MA2336.1 7 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 266 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 181 bp overlap
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