chr3 : 121,992,660 121,993,364
704 bp 98 TFs 0 linked genes
This 704 bp open chromatin element has no linked target genes and is bound by 98 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:121,987,660 – 121,998,364
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 144 bp overlap
ARID3A 2 datasets
ChIP GM12878 ENCFF006WWZ 309 bp overlap
ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 201 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 267 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 330 bp overlap
BACH1 2 datasets
ChIP GM12878 ENCFF576UEQ 365 bp overlap
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 239 bp overlap
BACH2 5 datasets
ChIP B-cell_IL2 GSE102460.BACH2.B-cell_IL2 461 bp overlap
ChIP B-cell_siBACH2 GSE102460.BACH2.B-cell_siBACH2 201 bp overlap
ChIP DOHH2 GSE69558.BACH2.DOHH2 586 bp overlap
ChIP OCI-Ly7 GSE69558.BACH2.OCI-Ly7 454 bp overlap
ChIP OCI-Ly7 GSE44420.BACH2.OCI-Ly7 515 bp overlap
BCL6 7 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 365 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 285 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 704 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 278 bp overlap
ChIP OCI-Ly1_si GSE107920.BCL6.OCI-Ly1_si 251 bp overlap
ChIP OCI-Ly7 GSE44420.BCL6.OCI-Ly7 191 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 436 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 444 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 229 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 172 bp overlap
BRD4 15 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 322 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 256 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 202 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 79 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 315 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 418 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 285 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 256 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 360 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 465 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 272 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 704 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 259 bp overlap
ChIP OCI-Ly1_JQ1 GSE53601.BRD4.OCI-Ly1_JQ1 330 bp overlap
ChIP P493-6_MYC_1H GSE42262.BRD4.P493-6_MYC_1H 165 bp overlap
CBFB 2 datasets
ChIP GM12878 ENCFF056JUS 432 bp overlap
ChIP ME-1 GSE46044.CBFB.ME-1 194 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 340 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 277 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 175 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 245 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 194 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
CIITA 1 dataset
ChIP Raji_AB1 GSE52941.CIITA.Raji_AB1 244 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 177 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 366 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 587 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 261 bp overlap
EBF1 4 datasets
ChIP GM12878 ENCFF167CZS 305 bp overlap
ChIP GM12878 ENCFF813OXE 265 bp overlap
ChIP LCL GSE75503.EBF1.LCL 151 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 400 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 228 bp overlap
ERG 4 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 129 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 141 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 229 bp overlap
ChIP SEM GSE117864.ERG.SEM 448 bp overlap
ESR1 9 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 158 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 248 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 506 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 494 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 386 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 142 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 245 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 307 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 78 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 81 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 285 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 88 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 232 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 196 bp overlap
FOXO1 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE68349.FOXO1.B-cell_GERMINAL_CENTER 343 bp overlap
FOXP1 1 dataset
ChIP B-cell_CD77-pos GSE114803.FOXP1.B-cell_CD77-pos 205 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 290 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 189 bp overlap
HIF1A 1 dataset
ChIP 501-mel GSE95280.HIF1A.501-mel 294 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 645 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 432 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 53 bp overlap
ChIP SU-DHL-4 GSE119038.KDM1A.SU-DHL-4 176 bp overlap
KMT2A 2 datasets
ChIP L826 GSE83671.KMT2A.L826 222 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 679 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 407 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 421 bp overlap
MAX 7 datasets
ChIP GM12878 ENCFF849VCQ 402 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 108 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 300 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 375 bp overlap
ChIP P493-6_4HR GSE125863.MAX.P493-6_4HR 336 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 319 bp overlap
ChIP P493-6_CMYC_24H GSE36354.MAX.P493-6_CMYC_24H 190 bp overlap
MED1 8 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 203 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 383 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 212 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 344 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 355 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 335 bp overlap
ChIP OCI-Ly1 GSE53601.MED1.OCI-Ly1 202 bp overlap
ChIP P493-6 GSE36354.MED1.P493-6 198 bp overlap
MEF2A 2 datasets
ChIP GM12878 ENCFF652BHX 239 bp overlap
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 340 bp overlap
MEF2B 6 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 315 bp overlap
ChIP DOHH2 GSE69558.MEF2B.DOHH2 330 bp overlap
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 331 bp overlap
ChIP KARPAS422 GSE69558.MEF2B.KARPAS422 217 bp overlap
ChIP OCI-Ly7 GSE69558.MEF2B.OCI-Ly7 263 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 543 bp overlap
MEF2C 2 datasets
ChIP GM12878 ENCFF473ASZ 254 bp overlap
ChIP GM12878 ENCSR000BNG.MEF2C.GM12878 216 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 302 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 704 bp overlap
MYC 9 datasets
ChIP BL41 GSE30726.MYC.BL41 241 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 307 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 299 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 317 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
ChIP P493-6_SHCTR GSE60223.MYC.P493-6_SHCTR 183 bp overlap
ChIP P493-6_SHTERC GSE60223.MYC.P493-6_SHTERC 113 bp overlap
ChIP Raji GSE30726.MYC.Raji 451 bp overlap
ChIP Ramos GSE30726.MYC.Ramos 362 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 129 bp overlap
NCOR1 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR1.OCI-Ly1 412 bp overlap
NCOR2 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.NCOR2.B-cell_GERMINAL_CENTER 258 bp overlap
ChIP OCI-Ly1 GSE29282.NCOR2.OCI-Ly1 359 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 123 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 120 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BJR.NR3C1.A-549 73 bp overlap
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 249 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 188 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 281 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 179 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 230 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 253 bp overlap
PAX5 7 datasets
ChIP DOHH2 GSE69558.PAX5.DOHH2 509 bp overlap
ChIP GM12878 ENCFF482PUW 251 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 534 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 396 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 408 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 427 bp overlap
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 406 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 437 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 326 bp overlap
POLR2A 6 datasets
ChIP GM12878 ENCFF521FXC 482 bp overlap
ChIP GM12878 ENCFF521FXC 561 bp overlap
ChIP Raji ENCFF613VGX 455 bp overlap
ChIP spleen ENCFF044PYR 201 bp overlap
ChIP spleen ENCFF446ZGT 273 bp overlap
ChIP spleen ENCFF446ZGT 518 bp overlap
POU2AF1 1 dataset
ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 214 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 216 bp overlap
POU2F2 3 datasets
ChIP GM12878 ENCFF207RKY 295 bp overlap
ChIP GM12891 ENCFF166YPP 259 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 192 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 102 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 364 bp overlap
RAD21 3 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 130 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 395 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 446 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 295 bp overlap
RBPJ 3 datasets
ChIP LCL GSE75503.RBPJ.LCL 328 bp overlap
ChIP MUTUL GSE75503.RBPJ.MUTUL 217 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 259 bp overlap
RELA 3 datasets
ChIP BJAB GSE117250.RELA.BJAB 437 bp overlap
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 213 bp overlap
ChIP BJAB_4h-activation GSE117250.RELA.BJAB_4h-activation 293 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 336 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 317 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 214 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 168 bp overlap
RUNX1 5 datasets
ChIP 697 GSE138031.RUNX1.697 205 bp overlap
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 143 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 651 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 143 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 179 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE65427.RUNX1T1.Kasumi-1 115 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 310 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 184 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 69 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 84 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 387 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 188 bp overlap
SRF 2 datasets
ChIP GM12878 ENCFF878IIX 131 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 108 bp overlap
STAT3 2 datasets
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 196 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 219 bp overlap
TBL1XR1 2 datasets
ChIP GM12878 ENCFF409FTM 311 bp overlap
ChIP GM12878 ENCFF409FTM 397 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 318 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 270 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCFF506WWB 257 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 183 bp overlap
TCF3 2 datasets
ChIP GM12878 ENCFF658WIO 297 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 193 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 222 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 160 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 483 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 344 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 268 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 175 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 143 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 241 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 306 bp overlap
ZMYM3 1 dataset
ChIP GM12878 GSE97661.ZMYM3.GM12878 241 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 355 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 317 bp overlap