chr1 : 7,550,192 7,550,887
695 bp 119 TFs 3 linked genes
This 695 bp open chromatin element is linked to VAMP3, PER3, and CAMTA1 and is bound by 119 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
VAMP3 220.7 kb Distal Multiome
PER3 233.7 kb Distal Multiome
CAMTA1 765.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:7,545,192 – 7,555,887
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 238 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 287 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 321 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 267 bp overlap
ARNT 2 datasets
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 162 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 258 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
BRD2 4 datasets
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 51 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 332 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 283 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 178 bp overlap
BRD4 11 datasets
ChIP 402-91 GSE111253.BRD4.402-91 70 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 221 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 145 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 54 bp overlap
ChIP Hep-G2 GSE123097.BRD4.Hep-G2 404 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 228 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 58 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 79 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 336 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 152 bp overlap
ChIP hESC GSE33281.BRD4.hESC 71 bp overlap
BRD9 2 datasets
ChIP Mel270 GSE124720.BRD9.Mel270 58 bp overlap
ChIP Mel270_DMSO GSE124720.BRD9.Mel270_DMSO 151 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 86 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 425 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 54 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 530 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 189 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 207 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 231 bp overlap
HES6 1 dataset
Motif DE_24h DE_24h-HES6_MA1493.1 10 bp overlap
HNF4A 2 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 282 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 695 bp overlap
INSM1 1 dataset
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
JUN 2 datasets
ChIP A549 ENCFF846DUV 118 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 315 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 123 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 274 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 437 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 404 bp overlap
KLF11 1 dataset
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF14 2 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
ChIP HEK293 ENCSR780ESQ.KLF14.HEK293 278 bp overlap
KLF16 1 dataset
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF17 2 datasets
Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 603 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 309 bp overlap
KLF5 1 dataset
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF9 4 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
ChIP HEK293 ENCFF588INF 345 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 274 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 290 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAZ 3 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 ENCFF994GSG 208 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 102 bp overlap
MED1 6 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 428 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 504 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 482 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 445 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 426 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 57 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 207 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 87 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 213 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 79 bp overlap
MYOG 1 dataset
Motif DE_24h DE_24h-MYOG_MA0500.3 8 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 316 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 61 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 193 bp overlap
NHLH1 1 dataset
Motif DE_24h DE_24h-NHLH1_MA0048.3 9 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 159 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 116 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PATZ1 2 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 266 bp overlap
PAX1 1 dataset
Motif DE_24h DE_24h-PAX1_MA0779.2 16 bp overlap
PAX9 1 dataset
Motif DE_24h DE_24h-PAX9_MA0781.2 16 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 258 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 75 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 428 bp overlap
PKNOX2 1 dataset
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 449 bp overlap
POLR2A 6 datasets
ChIP HCT116 ENCFF508RDJ 126 bp overlap
ChIP HeLa-S3 ENCFF224LWS 172 bp overlap
ChIP HeLa-S3 ENCFF224LWS 695 bp overlap
ChIP HeLa-S3 ENCFF455YYQ 71 bp overlap
ChIP IMR-90 ENCFF672YWV 220 bp overlap
ChIP Peyer's patch ENCFF767HVN 417 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 331 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 247 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 203 bp overlap
PPARD 1 dataset
Motif DE_24h DE_24h-PPARD_MA1550.2 14 bp overlap
PRDM9 2 datasets
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 129 bp overlap
RELA 3 datasets
ChIP 786-O GSE86092.RELA.786-O 86 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 287 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 147 bp overlap
RXRB 1 dataset
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 52 bp overlap
SMARCA4 2 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 216 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 364 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 191 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 417 bp overlap
ChIP GP5D GSE51234.SMC3.GP5D 58 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SP1 3 datasets
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
ChIP HEK293 GSE76494.SP1.HEK293 266 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SP3 4 datasets
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
ChIP HEK293 ENCFF087XLA 238 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 533 bp overlap
SP4 3 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
ChIP HEK293 GSE76494.SP4.HEK293 404 bp overlap
SP5 3 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 53 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 227 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 229 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 600 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP HCT-116 GSE108920.TEAD1.HCT-116 383 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 151 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_24h DE_24h-TGIF2LY_MA1572.1 12 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1574.2 13 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 144 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 161 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 185 bp overlap
ZBTB26 3 datasets
ChIP HEK293 ENCFF752POA 292 bp overlap
ChIP HEK293 ENCFF752TCU 536 bp overlap
ChIP HEK293 ENCFF752TCU 683 bp overlap
ZEB1 9 datasets
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 252 bp overlap
ChIP HEK293 ENCFF007TAP 425 bp overlap
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 246 bp overlap
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 133 bp overlap
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 129 bp overlap
ChIP MIA-PaCa-2 GSE88734.ZEB1.MIA-PaCa-2 653 bp overlap
ChIP MIA-PaCa-2_WT GSE88734.ZEB1.MIA-PaCa-2_WT 441 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 183 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 392 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 496 bp overlap
ZNF148 1 dataset
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF263 3 datasets
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ChIP HEK293 ENCFF336CWQ 105 bp overlap
ChIP HEK293 ENCFF336CWQ 331 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF460 1 dataset
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 165 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 269 bp overlap
ZNF740 1 dataset
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
ZNF784 1 dataset
Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap